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8 protocols using ip one kit

1

BTK Knockout Cell Signaling Assay

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Compounds were added in a 384-well low-volume plate using D300e digital dispenser (TECAN), and 50,000 Ramos cells (wild-type and BTK knockout) were incubated with compounds in cell growth medium for 4 hours before 10 μg/mL goat F(ab’)2 antihuman IgM (Southern Biotech, catalog no. 2022–01) was added in stimulation buffer (IP-One kit, Cisbio, catalog no. 40451). The cells were incubated overnight in a 37°C cell incubator. The next day, inositol phosphate 1 (IP1)-D2 and anti-IP1 cryptate (IP-One kit, Cisbio, catalog no. 40451) were added and incubated for 1 hour at room temperature according to the manufacturer's instructions. The assay was read on an EnVision Multilabel Plate Reader (Perkin Elmer) using the HTRF setting.
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2

IP1 Accumulation Assay in CHO Cells

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CHO cells were plated in 6-well plates and transfected with the indicated plasmids. Using TrypLE Express (Thermo Fisher Scientific), cells were then lifted and resuspended in 500 μl of DMEM/F12. Cell suspension (7 μl/well) was transferred in a white opaque 384-well plate. IP1 accumulation assay was performed using the IP-One kit (Cisbio) following manufacturer’s manual. Seven microliters of agonist diluted in stimulation buffer was added to each well and incubated for 1 h at 37 °C. Cells were then lysed and incubated with the detection reagents. Homogenous time-resolved fluorescence reading was performed on a SpectraMax i3 plate reader (Molecular Devices). Each condition was run in triplicate, and experiments were repeated independently at least three times.
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3

Quantifying Cellular IP1 Accumulation

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CHO cells were plated in a 6 well plate and transfected with the indicated plasmids. Cells were then lifted using TrypLE Express (Thermo Fisher Scientific) and resuspended in 500 μl of DMEM/F12. 7 μl of cell suspension was seeded per well in a white opaque 384-well plate (14,000 cells/well). 7 μl of agonist solution diluted in IP-ONE kit stimulation buffer containing lithium was then added to each well and incubated for 1 hour at 37 °C. Cells were then lysed and accumulated IP1 was measured by TR-FRET using the IP-ONE kit (Cisbio) following the manufacturer’s instruction. Readings were performed on a Spectramax® i3 (Molecular Devices). Each condition was run in triplicate and experiments were repeated independently at least 3 times.
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4

Measuring IP1 accumulation in CHO-K1 cells

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CHO-K1 cells were seeded in six-well plates and transfected with the indicated plasmids. Cells were then lifted using TrypLE Express (Thermo Fisher Scientific) and resuspended in 400 μl DMEM/F12. Cell suspension (7 μl/well) was transferred to a white opaque 384-well plate before adding agonist in stimulation buffer (included in kit). Cells were incubated for 1 h at 37°C, lysed and accumulated IP1 was measured using the IP-One kit (Cisbio) following the manufacturer’s instructions. Readings were measured with a SpectraMax i3 plate reader (Molecular Devices, Sunnyvale, CA). Each condition was run in triplicate, and experiments were repeated independently at least three times.
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5

Investigating LTD4-Induced IP1 Production

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The Cisbio IP-One kit was used according to the manufacturer’s instructions. HEK293 cells (ATCC CRL-1573) were seeded onto poly-L-Lysine-coated 384-well plates at 20,000 cells per well and transfected with 40 ng of DNA coding for the wild-type CysLT2R or for the CysLT2R mutants using the X-treme-Gene HP (Roche) agent. At 48 h post transfection, the media was removed and the cells were washed with fresh Hank’s Balanced Salt Solution. Cells were either stimulated directly with a range of LTD4 concentrations (10−12–10−6 M) prepared in IP1 stimulation buffer, or sequentially stimulated with a range of antagonist concentrations (10−11–10−5 M), and LTD4 concentrations corresponding to the EC80 for each mutant. No LTD4 degradation was observed by mass spectrometry (Supplementary Fig. 8). After equilibration for 30 min at 37 °C, the cells were lysed with IP1-D2 and Ab-Crypt reagents in lysis buffer and then incubated for 1 h at RT. Fluorescence signal was recorded on a Tecan GENios Pro plate reader using an HTRF filter set (λex 320 nm, λem 620 and 655 nm). Data were plotted using the three parameters EC50/IC50 fit in GraphPad Prism 7 (San Diego, CA) and represent the mean ± s.d. of at least two independent experiments performed in quadruplicate.
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6

Quantifying cAMP and IP1 Signaling

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Cyclic adenosine monophosphate (cAMP) levels were assessed using AlphaScreen cAMP detection kit, (catalog# 6760635, PerkinElmer). Inositol monophosphate (IP1) levels were assessed using the IP-One kit, (catalog# 62IPAPEB, Cisbio). Both AlphaScreen and Homogeneous Time Resolved Fluorescence (HTRF) signals were assessed on EnSight multimode plate reader.
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7

High-Throughput GnRH Receptor Assay Protocol

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The same cells and controls were utilized as in the primary FLIPR assay. On the day of screening, cells were thawed and added to plates (3 μL/well, 1,500 cells/well) in growth media. This was followed immediately by pin-tool addition of test compounds and controls (positive control was 10 μM SR-01000435409; negative control was DMSO only) in 26 nL DMSO. The plates were incubated for 17 h at 37 °C, 5% CO2 prior to addition of 3 μL of 1,000 nM GnRH in 2X stimulation buffer or stimulation buffer only (buffer provided in CisBio IP-One Kit). The plates were incubated for 2 h at 37 °C and 5% CO2. 1.5 μL IP-One D2 (1:20 dilution—CisBio) and 1.5 μl IP-One Cryptate (1:20 dilution—CisBio) were added to each well and incubated for 1 h at room temperature in the dark. The plates were read on Viewlux (PerkinElmer Life Sciences) with excitation at 340 nM and emissions at 618 nM and 671 nM. A detailed outline of the confirmation assay can be found in Supplemental Table 2. The concentration responses of the control compounds are shown in Fig. 2.

1536-well assay response to GnRHR controls. (A) Concentration–response of the controls when tested in the Fluo2 assay vs. (B) the IP-One TR-FRET assay. EC50 values are shown in M. N = 16 replicates per concentration; error bars presented in SD.

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8

Measuring Receptor Function via IP-one Assay

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Receptor function was determined by measuring intracellular inositol monophosphate concentration using the IP-one kit from Cis-bio according to the procedure described previously (see Supporting Information for details)21 (link). R 892 and WIN 64,338 hydrochloride (both from Tocris) were used as reference antagonists for B1R and B2R, respectively51 (link).
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