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6 protocols using anti ly6g antibody

1

Immunohistochemical Analysis of LY6G in Kidney Tissue

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Paraffin-embedded kidney slides were processed sequentially through deparaffinization, rehydration, and antigen retrieval. Subsequently, the slides were subjected to a 15-minute incubation with a hydrogen peroxide solution at room temperature, followed by a 1-hour blocking step with 10% goat serum. Subsequently, the slices were incubated overnight at 4 °C with the primary antibody. The following day, the sections were allowed to equilibrate at room temperature for at least 30 min. Subsequently, the sections were treated with diaminobenzidine substrate and counterstained with hematoxylin before being mounted. Finally, the slices were examined under a Nikon microscope (Japan). Three kidney specimens from all groups were blindly caught across three equal microscopic fields (400x) for analysis. With the purpose of reckoning average optical density (AOD), we operated integrated optical density (IOD) measurements on IHC pictures. AOD = IOD / area. After delimiting the zone of interest, the AOD of the chosen precinct (IOD per unit area) was determined utilizing Image-J software. AOD depicts the protein immunoreactivity in the kidneys. The primary antibody used in this experiment was Anti-LY6G antibody (1:100, Lot No: ab25377) (Abcam, USA).
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2

Quantitative Histological Profiling of Ly6G and BRG1

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Histological analyses were performed essentially as described before. Briefly, the paraffin embedded sections were blocked with 10% normal goat serum for 1 h at room temperature and then incubated with an anti‐Ly6G antibody (Abcam, cat# ab238132, 1:100) or anti‐BRG1 antibody (Abcam, cat# ab110641, 1:100). Staining was visualized by incubation with anti‐rabbit secondary antibody and developed with a streptavidin‐horseradish peroxidase kit (Pierce, cat# 21140) for 20 min. Pictures were taken using an Olympus IX‐70 microscope. Slides were observed under a light microscope at high power (X40) by two pathologists independently in a double‐blind fashion. The scoring system was based on the following criterion: the staining intensity was divided into quintiles; the slides with the strongest staining were given a score of 5 (top quintile) whereas the slides with the dimmest staining were given a score of 1 (bottom quintile).
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3

Immunostaining and Colocalization Analysis of Kidney Tissue

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Frozen slides with mouse kidney tissue were fixed in acetone, blocked, then incubated with primary antibodies, including anti-podocin antibody (1:100; Sigma-Aldrich, St. Louis, MO), anti-desmin antibody (1:100; Invitrogen, Carlsbad, CA), anti-Asm antibody (1:100; LSBio, Seattle, WA), anti-Cre antibody (1:100; Millipore, Temecula, CA), anti-ceramide antibody (1:100; ALEXIS, Farmingdale, NY), anti-NLRP3 antibody (1:50; Abcam, Cambridge, MA), anti-ASC antibody (1:50; Santa Cruz Biotechnology, Dallas, TX), anti-Ly6G antibody (1:50; Abcam, Cambridge, MA), anti-VPS16 antibody (1:50; proteintech, Rosemont, IL), and anti-Lamp-1 antibody (1:50; Abcam, Cambridge, MA), overnight at 4°C. Immunofluorescent staining was accomplished by incubating slides with Alexa-488 or Alexa-594-labeled secondary antibodies (Invitrogen, Carlsbad, CA) for 1 hour at room temperature [34 (link)]. Slides were washed, mounted, and observed by a confocal laser scanning microscope (FluoView FV1000, Olympus, Tokyo, Japan). Image Pro Plus 6.0 (Media Cybernetics, Bethesda, MD) was used to analyze colocalization which was expressed as Pearson correlation coefficient (PCC).
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4

Immunofluorescence and TUNEL Assay for Tissue Sections

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Tissue samples were fixed in 4% paraformaldehyde, embedded into the optimal-cutting-temperature compound, and cut into 5-μm sections. The sections were then incubated in a blocking solution (PBS containing 10% goat serum and 1% bovine serum albumin) for 30 min, followed by overnight co-incubation at 4°C with the anti-LY6G antibody (Abcam). After washing, the sections were incubated with the fluorescein isothiocyanate-conjugated secondary antibody (Proteintech) for 2 h, and the cell nuclei were labeled with 4′,6-diamidino-2-phenylindole (Bioss).
The TUNEL assay was performed using One-Step TUNEL Apoptosis Assay Kit (Beyotime Biotechnology) following the manufacturer’s instructions. Tissue sections were fixed in 4% paraformaldehyde, permeabilized with 0.1% Triton X-100 for 10 min, and incubated with the TUNEL reaction mixture for 1 h at 37°C in the dark. Cell nuclei were visualized with 4′,6-diamidino-2-phenylindole. Images were captured using an Olympus IX71 microscope and quantified using the ImageJ software.
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5

Lung Histology Analysis of MP-Infected Mice

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Mice were infected with MP for 72 hours before euthanasia and their lungs were harvested. The right inferior lobe was fixed in 4% paraformaldehyde, followed by dehydration with ethanol and embedding in paraffin. Paraffin-embedded lung tissues were sectioned at 8 μm and processed for H&E and immunohistochemical staining. Immunohistochemistry was performed to detect PMNs infiltration using anti-Ly6G antibody (Abcam, America).
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6

Histopathology and Immunohistochemistry in Influenza

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NBF-fixed mouse and ferret lungs were processed for histopathology and immunohistochemistry as previously described (13) . Hematoxylin and eosin (H&E)-stained slides were examined from two mice or four ferrets per virus group at 5 days post-infection.
Immunohistochemistry was done on the same sets of fixed tissues as the histopathology. For the mouse lung tissues, Influenza A virus and immune cell (neutrophil, B and T cells) distribution were measured by immunohistochemistry. A goat polyclonal primary anti-influenza A virus (catalog no. ab20841; Abcam, USA) was used to stain influenza NP proteins. Anti-CD19 antibody (catalog no. 90176S; Cell Signaling Technology, USA), anti-CD3 antibody (catalog no. ab16669;
105 and is also made available for use under a CC0 license.
Abcam), and anti-Ly6G antibody (catalog no. ab210204; Abcam) were used to stain B cells, T cells, and neutrophils, respectively. For the ferret lung tissues, only Influenza A virus distribution was measured by immunohistochemistry. All slides were scanned on an Aperio ScanScope XT system (Aperio, USA), enabling whole-slide analysis.
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