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Abi prism 7900 sequence detection system of sybr green 2

Manufactured by Takara Bio
Sourced in Japan

The ABI PRISM 7900 sequence detection system is a real-time PCR instrument designed for SYBR Green II-based gene expression analysis. It provides a platform for quantitative detection of DNA sequences during the amplification process.

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4 protocols using abi prism 7900 sequence detection system of sybr green 2

1

Quantitative Gene Expression Analysis

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The TRIzol (Invitrogen) was used to extract the total RNA from cells or tumor tissues. The PrimeScript RT reagent kit (Takara Biotechnology, Inc., Kyoto, Japan) was used for reverse transcription of RNA into cDNA. The TaqMan primers and probes were all from Takara. The qPCR was performed according to the ABI PRISM 7900 sequence detection system of SYBR Green II (Takara Biotechnology, Inc.). The reaction conditions were pre-denaturation at 95°C for 5 min and 40 cycles of denaturation at 95°C for 15 s, annealing at 60°C for 20 s, and extending at 72°C for 35 s. GAPDH is the internal reference for ANXA2 and U6 is the internal reference for miR-206 and the 2-ΔΔCt method was used to analyze gene expression. The primer sequences (synthetized by Sangon Biotech Co., Ltd., Shanghai, China) are shown in Table 1.
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2

Quantitative RT-PCR analysis of miRNA and mRNA

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Total RNA was extracted by TRIzol (15,596,026, Thermo Fisher) and then reversely transcribed into cDNA using PrimeScript RT reagent kits (Takara, Otsu, Shiga, Japan). TaqMan primers and probes were provided by Takara. qPCR was performed using the ABI PRISM 7900 sequence detection system of SYBR Green II (Takara) under the following reaction conditions: pre-denaturation at 95 °C for 10 min, and then 40 cycles of denaturation at 95 °C for 10 s, annealing at 60 °C for 20 s, and finally extension at 72 °C for 34 s. GAPDH and U6 acted as internal references. Data were evaluated using 2−ΔΔCt method. The amplified primer sequences are listed in Table 1.

Primer sequences

GeneForward 5ʹ–3ʹReverse 5ʹ–3ʹ
miR-18a-5pGGGATGAGATGAAGCACTTGCGTGTCGTGGAGT
NACC1TTTCAAACAAAGATGCCACAGTTCCCTAAACTCCTAAGCAGATA
AKTCCCTGAGGCATTTAGGCAGCTAAGGTAGAGAGGTGGCTTAGGCT
mTORCAGCCAGATGCAATCAATGCCTCTGCTCCTGAGCATTGACGTC
U6CTCGCTTCGGCAGCACATATACTACGCTTCACGAATTTGCGTGTC
GAPDHGTCGATGGCTAGTCGTAGCATCGATTGCTAGCTGGCATGCCCGATCGATC
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3

Quantitative analysis of miR-135b-5p and FOXO1

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The TRIzol reagent (Invitrogen, Carlsbad, CA, USA) was used to extract the total RNA content. The PrimeScript RT reagent kit (Takara, Dalian, China) was used for reverse transcription of the RNA content into cDNA. The qPCR was performed in strict compliance with the ABI PRISM 7900 sequence detection system of SYBR Green II (Takara Biotechnology). The reaction conditions were as follows: pre-denaturation at 95°C for 5 min and 40 cycles of denaturation at 95°C for 15s, annealing at 60°C for 20 s and extension at 72°C for 35s. GAPDH and U6 were regarded as internal parameters while the analysis was conducted based on the 2−ΔΔCt method. The primer sequences synthesized by Sangon Biotech Co., Ltd. (Shanghai, China) are shown in Table 1.

Primer sequence

GeneForward 5ʹ-3’Reverse 5ʹ-3’
miR-135b-5pAGGGCACAGGAGGGGCAGTGCAGGGTCCGAGGTATT
FOXO1CGTAAGCTGGGAGAGACCTGGGATGGATGGGAATGAACAC
GAPDHCTCAGACACCATGGGGAAGGTGAATGATCTTGAGGCTGTTGTCATA
U6ATTGGAACGATACAGAGAAGATTGGAACGCTTCACGAATTTC
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4

RNA Extraction and qPCR Analysis

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TRIzol (Invitrogen) was adopted to extract the total RNA, and the purity and concentration of RNA were evaluated using an ultramicro spectrophotometer (Spectral Instrument, Shanghai, China). Then, RNA (1 μg) was reversely transcribed into cDNA using a reverse transcription kit (Thermo Fisher Scientific Inc., Waltham, MA, USA). The ABI PRISM 7900 sequence detection system of SYBR Green II (Takara Bio Inc., Kyoto, Japan) was used for quantitative PCR. 2‐ΔΔCt method was applied for gene relative expression. GAPDH and U6 served as the internal reference. All primers were synthesized by Sangon Biotech (Shanghai, China; Table 1).
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