The largest database of trusted experimental protocols

4 protocols using odyssey western blot analysis system

1

Immunoblotting of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunoblotting, total cellular extracts were prepared using RIPA lysis buffer containing protease inhibitor cocktail (Beyotime Institute of Biotechnology). Protein concentration was determined using a bicinchoninic acid kit (Beyotime Institute of Biotechnology). From each sample, 40 µg protein was added and separated via SDS-PAGE on a 10% gel, and separated proteins were subsequently transferred to a nitrocellulose blotting membrane (Cytiva). Non-specific binding was blocked by 5% skimmed milk for 1.5 h at room temperature and then the membranes were incubated overnight at 4˚C with specific primary antibodies. The following day, the membranes were incubated with HRP-conjugated goat anti-rabbit secondary antibody (cat. no. 7074S; Cell Signaling Technology, Inc.) for 1 h at room temperature. Signals were visualized using the Odyssey Western Blot Analysis system (LI-COR Biosciences). Anti-CLDN7 (cat. no. ab265583) antibody was provided by Abcam, anti-IRF2 (cat. no. sc-374327) and anti-GAPDH (cat. no. sc-47724) antibodies were purchased from Santa Cruz Biotechnology, Inc. The relative intensity of each band was semi-quantified using ImageJ. GAPDH was used as the loading control.
+ Open protocol
+ Expand
2

Western Blot Analysis of Cleaved Caspase-3

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested, washed in PBS (0.1 M, pH 7.4), centrifuged, and resuspended in cell lysis solution containing 20 mM Tris (pH 7.5), 150 mM NaCl, 1% Triton X-100 and several protein inhibitors such as sodium pyrophosphate, β-glycerophosphate, EDTA, Na3PO4 and leupeptin (Beyotime Institute of Biotechnology, Haimen, China). The protein concentration of each extract was determined by the bicinchoninic acid (BCA) assay [38 ]. Western blot was performed according to the procedure of Towbin et al. [39 (link)] with some modification. Cell extracts (60 μg protein/lane) were separated by electrophoresis on 12% SDS-polyacrylamide gels. Proteins were subsequently transferred to a nitrocellulose membrane, which was then incubated with 5% skimmed milk in Tris-buffered saline with 0.1% Tween 20 (TBST) for 1 h at room temperature. Afterward, the membranes were incubated with the primary antibodies (rabbit monoclonal anti-cleaved caspase-3 (1:100) and anti-β-actin (1:100)) overnight at 4 °C. After washing with TBST, membranes were then incubated with FITC-labeled secondary antibodies (Beyotime Institute of Biotechnology, Haimen, China), and the signal was read with an Odyssey® Western Blot Analysis system (Li-COR Biosciences, Lincoln, NE, USA). The signal intensity of primary antibody binding was quantitatively analyzed with Sigma Scan Pro 5 (Systat Software Inc., San Jose, CA, USA)
+ Open protocol
+ Expand
3

Lung Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lung was rinsed with saline to remove blood. The lung was then homogenized and centrifuged at 10,000 rpm for 5 min. Thereafter, the supernatant was collected and protein concentrations were determined with the BCA Protein Assay Reagent (Pierce, Rockford, IL, USA). Proteins were resolved with sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) on a 10% gel. After electrophoresis, proteins were immediately transferred to a nitrocellulose membrane (Bio-Rad Laboratories, Hercules, CA, USA) at 30 mA for 2 h. The membranes were blocked with 5% nonfat dry milk in TBS/Tween (25 mM Tris–HCl, 0.14 M NaCl, 2% Tween 20) at 4°C overnight. Membranes were incubated with primary antibody for one h and the antibody dilutions were as follows: anti-TGF-β1, 1:1000; anti-Smad7, 1:500; anti-p-Smad2/3, 1:500; anti-Collagen I, 1:1000. Washing between and after antibody incubation steps was performed three times for 10 min each with TBS/Tween buffer. Then, the membrane was incubated with fluorescent secondary antibody and scanned with Odyssey® Western Blot Analysis system (LI-COR, Lincoln, NE, USA). The signal intensity of primary antibody binding was quantitatively analyzed with Sigma Scan Pro 5 and was normalized to the loading control β-actin.
+ Open protocol
+ Expand
4

Western Blot Analysis of Cell Proliferation Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
AGS cells were harvested and total protein was extracted using RIPA lysis buffer (Beyotime Institute of Biotechnology). Total protein was quantified using a protein concentration determination kit (cat. no. P0012; Beyotime Institute of Biotechnology). Proteins (30 µg/lane) were separated via SDS-PAGE (15%) and were subsequently transferred onto PVDF membranes (MilliporeSigma). After blocking with 5% BSA (Beyotime Institute of Biotechnology) at room temperature for 2 h, the membranes were then incubated with the following primary antibodies (Abcam) at 4°C overnight: Anti-Ki67 (cat. no. ab15580; 1:1,000), anti-proliferating cell nuclear antigen (anti-PCNA; cat. no. ab92552; 1:1,000), anti-MMP2 (cat. no. ab92536; 1:1,000), anti-MMP9 (cat. no. ab76003; 1:1,000) and anti-KIF23 (cat. no. ab174304; 1:1,000). After the incubation with the primary antibodies, the membranes were washed with TBS containing Tween-20 (0.1%) and incubated at room temperature for 1.5 h with HRP-conjugated secondary antibodies [Goat Anti-Mouse IgG(H+L), 1:2,000, cat. no. SA00001-1; Goat Anti-Rabbit IgG(H+L), 1:2,000, cat. no. SA00001-2; ProteinTech Group, Inc.]. Protein bands were visualized using the Odyssey Western Blot Analysis system (LI-COR Biosciences) and semi-quantified using ImageJ software, version 7.6.5 (National Institutes of Health).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!