The largest database of trusted experimental protocols

6 protocols using anti h3k79me2

1

Histone Modification Profiling by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extracts were always prepared from L4 animals (except when comparing 1-d-old adult and 4-d-old adults). Samples were boiled in SDS–PAGE buffer for 2 × 5 min and sonicated for 10 min using a Diagenode Bioruptor (UCD-300). The following antibodies were used: anti-H3K4me3 (C42D8; 1:750; Cell Signaling Technology); anti-H3K4me1 (ab8895; 1:1,000; Abcam); anti-H3K4me2 (07-030; 1:1,000; Millipore) anti-H3 (ab1791; 1:10,000; Abcam); anti-H3K9me3 (ab8898, 1:1,000; Abcam); anti-H3K27me3 (MABI0323, 1:1,000; Thermo Fisher Scientific); anti-H3K36me3 (D5A7; 1:1,000; Cell Signaling Technology); anti-H3K79me2 (D15 × 108; 1:1,000; Cell Signaling Technology) and peroxidase-labelled anti-rabbit and anti-mouse secondary antibodies (1:10,000; Vector Laboratories). Western blots were quantified using ImageJ (National Institutes of Health).
+ Open protocol
+ Expand
2

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total cell lysates were prepared in 2× sample loading buffer [250 mM Tris-HCl (pH 6.8), 10% glycerol, 4% sodium dodecyl sulfate (SDS), 2% β-mercaptoethanol, 0.006% bromophenol blue, 5 mM sodium orthovanadate, and 50 mM sodium fluoride; Bio-Rad, Hercules, CA, USA]. The protein concentrations of samples were quantified using the bicinchoninic acid (BCA) method [34 (link)] and a BCA Protein Assay Kit (Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of protein (5–20 μg) were separated by 6–13% SDS-polyacrylamide gel electrophoresis (PAGE) and transferred to polyvinylidene fluoride membranes (Millipore, Bedford, MA, USA). The membranes were blocked with 5% bovine serum albumin (Sigma-Aldrich) and then probed with anti-DOT1L, anti-H3K79me2, anti-β-Actin, anti-histone H3, anti-H3K4me2, anti-H3K27me2, anti-H3K36me2, anti-H3K79me1, anti-H3K79me3, and anti-Vimentin antibodies purchased from Cell Signaling Technology (Beverly, MA, USA) or with anti-E-cadherin and anti-N-cadherin antibodies purchased from (BD Biosciences, San Jose, CA, USA). The blots were detected using a WEST-Queen detection system (iNtRON Biotechnology, Seongnam, Korea) [35 (link)].
+ Open protocol
+ Expand
3

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total cell lysates were prepared in 2× sample loading buffer (250 mM Tris-HCl [pH 6.8], 10% glycerol, 4% SDS, 2% β-mercaptoethanol, 0.006% bromophenol blue, 5 mM sodium orthovanadate, and 50 mM sodium fluoride; Bio-Rad). The protein concentrations of samples were measured using the bicinchoninic acid method.40 (link) Equal amounts of protein (520 μg) were separated by 8%–15% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Millipore, Bedford, MA, USA).41 (link) The membranes were blocked with 5% BSA (Sigma-Aldrich) and then probed with anti-E-cadherin, anti-N-cadherin (BD Biosciences), anti-DOT1L, anti-H3K4me2, anti-H3K27me2, anti-H3K36me2, anti-H3K79me2, anti-Histone H3 (Cell Signaling Technology, Beverly, MA, USA), anti-ZEB1, anti-vimentin, or anti-β-actin (Santa Cruz Biotechnology, Dallas, TX, USA) antibodies. The blots were detected with an enhanced chemiluminescence (ECL) detection kit (GE Healthcare, Little Chalfont, UK).
+ Open protocol
+ Expand
4

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total cell lysates were prepared in 2× sample loading buffer [250 mM Tris-HCl (pH 6.8), 10% glycerol, 4% sodium dodecyl sulfate (SDS), 2% β-mercaptoethanol, 0.006% bromophenol blue, 5 mM sodium orthovanadate, and 50 mM sodium fluoride; Bio-Rad, Hercules, CA, USA]. The protein concentrations of samples were quantified using the bicinchoninic acid (BCA) method [38 (link)] and a BCA Protein Assay Kit (Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of protein (5–20 μg) were separated by 6–13% SDS-polyacrylamide gel electrophoresis (PAGE) and transferred to polyvinylidene fluoride membranes (Millipore, Bedford, MA, USA). The membranes were blocked with 5% bovine serum albumin (Sigma-Aldrich) and then probed with anti-DOT1L, anti-H3K79me2, anti-β-Actin, anti-histone H3, anti-H3K4me2, anti-H3K9me2, anti-H3K27me2, anti-H3K36me2, and anti-Vimentin antibodies purchased from Cell Signaling Technology (Beverly, MA, USA) or with anti-E-cadherin and anti-N-cadherin antibodies purchased from BD Biosciences (San Jose, CA, USA). The blots were detected using a WEST-Queen detection system (iNtRON Biotechnology, Seongnam, Republic of Korea).
+ Open protocol
+ Expand
5

Histone Modification Profiling Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed using lysis buffer following our published protocol (Yang et al., 2006 (link); Wang et al., 2014 (link)) and subjected to SDS-polyacrylamide gel electrophoresis (PAGE) (10 to 30 μg of protein/lane). The following primary antibodies were used: anti-H3 acetylation, anti-H3K4me2, anti-H3K36me2, anti-H3K79me2, anti-H3K9me2, anti-H3K27me3, anti-total H3, anti-G9a, anti-SUV39H1 (suppressor of variegation 3–9 homolog 1), and anti-EZH2 (enhancer of zeste homolog 2) (Cell Signaling Technology, Beverly, MA); anti-GLP (G9a-like protein) (Abcam, Cambridge, MA); anti-phospho-histone H2A.X (Ser139) (γH2AX), and anti-β-actin (Millipore Sigma, St. Louis, MO).
+ Open protocol
+ Expand
6

Thioglycolate-Induced Murine Macrophage Isolation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse peritoneal macrophages were harvested 4 days after thioglycolate (Merck) injection. Bone marrow cells were flushed from tibias and femurs with cold Dulbecco's modified Eagle's medium (DMEM) and were cultured in DMEM supplemented with 10% fetal The antibody against pro-IL-1b was from R&D systems (AF-401-NA); anti-H3H36me1 (ab176920) and anti-H3K36me2 (ab176921) were from Abcam; anti-H3K4me3 (#9751), anti-H3K27me3 (#9733), anti-H3K36me3 (#4909), anti-H3K27ac (#8173), and anti-H3K79me2 (#5427) were from Cell Signaling Technology; anti-b-actin (M1210-2), anti-rabbit IgG-HRP (HA1001), anti-mouse IgG-HRP (HA1006), and anti-goat IgG-HRP (HA1005) were from HuaBio; and the ChIP kit (#9005) was from Cell Signaling Technology.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!