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5 protocols using ab97545

1

Antibody Panel for Endosomal Trafficking

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Antibodies used in this study are as follows: SNX1 [clone 51; 611482; BD Bioscience; immunofluorescence (IF) 1:200], GLUT1 (ab40084; Abcam; IF 1:200), Golgin97 (clone CDF4; A-21270; Thermo Fisher Scientific; IF 1:400), VPS26 (ab23892; Abcam; IF 1:200), VPS35 (ab10099; Abcam; IF 1:200), VPS35 [ab97545; Abcam; IF 1:200), VPS35 [ab157220; Abcam; western blotting (WB) 1:1000], VPS29 (ab98929; Abcam; WB 1:200), FAM21 (gift from Daniel D. Billadeau, Mayo Clinic, Rochester, MN; IF 1:400), EEA1 (N-19; sc-6415; Santa Cruz Biotechnology; IF 1:200), TGN46 (AHP500G; Bio-Rad Laboratories; IF 1:200), anti-Myc (gift from Harry Mellor, The University of Bristol, UK; IF 1:500), LAMP1 (DSHB Hybridoma Product; H4A3; deposited to the DSHB by August, J.T./Hildreth, J.E.K.; IF 1:500), LAMP1 (ab24170; Abcam; IF 1:200), mouse EEA1 (610457; BD Bioscience; IF 1:200), CI-MPR (ab124767; Abcam; WB 1:1000, IF 1:200), Itgβ1 (TS2/16; IF 1:200), SNX6 (Clone D-5; 365965; Santa Cruz Biotechnology; WB 1:500), PMP70 (PA1-650; Invitrogen; IF 1:200), WASH1 (gift from Daniel D. Billadeau; IF 1:400), C16orf62 (PA5-28553; Pierce; IF 1:200), sortilin (ab16640; Abcam; WB 1:1000), cathepsin D (21327-1-AP, Proteintech; WB 1:1000), SNX5 (ab180520; Abcam; WB 1:500) and β-actin (A1978; Sigma-Aldrich; WB 1:2000).
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2

Quantitative Western Blot Analysis

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Proteins from total cell lysates (10 to 20 μg) were separated by SDS-PAGE, transferred onto PVDF membranes (Hybond 0.2 μm; Amersham GE Life Sciences), and probed using the indicated antibodies. The secondary HRP-conjugated antibody was visualized by chemiluminescence (SeraCare developer solution). For anti-tubulin probing, membranes were first treated with stripping buffer (Thermo Scientific), washed, and reprobed. Polyclonal rabbit antibodies against VPS35 (ab97545; abcam), VPS29 (ab98929; abcam), rabbit monoclonal antibody against VPS26 (ab98929; abcam) or mouse monoclonal antibody against β-tubulin (catalog no. T8328; Sigma) were used according to the manufacturer’s instructions. Quantification of immunoblots was performed using ImageJ.
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3

Antibody Inventory for Organelle Studies

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Antibodies used in this study were: From Abcam: rabbit anti–CI-MPR (ab124767), rabbit anti-LAMP1 (ab24170), rabbit anti-GLUT1 (ab15309), rabbit anti-VPS35 (ab97545), rabbit anti-VPS26 (ab181352), rabbit anti-VPS29 (ab98929), mouse anti-SNX27 (ab77799), rabbit anti-SNX5 (ab18520), and rabbit anti-INSR (ab131238). From BD: mouse anti-EEA1 (610457), mouse anti-SNX1 (611482), and mouse anti-SNX2 (611308). From AbD Serotec/Bio-Rad Laboratories: sheep anti-TGN46 (AHP500) and mouse anti–CI-MPR (anti-CD222; clone MEM-238). Further antibodies used were: rabbit anti–IGF1R β (9750; Cell Signaling Technology), mouse anti-GAPDH (10494-1-AP; Proteintech), rabbit anti-GGA2 (10356-1-AP; Proteintech), rabbit anti-AP1B1 (16932-1-AP; Proteintech), mouse anti-SNX6 (S6324; Sigma-Aldrich), rat anti-myc (clone 9E1; ChromoTek), and rat anti-GFP (clone 3H9; ChromoTek).
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4

Multimarker Immunofluorescence Analysis of Neuronal Trafficking

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The following primary antibodies were used: Early endosome antigen 1 (EEA1) at 1:500 (#610456; BD Biosciences); amyloid precursor protein (APP) at 1:500 (#ab32136; Abcam); microtubule-associated protein 2 (MAP2) at 1:1000 (ab92434; Abcam); Ras-related protein Rab-7a (Rab7) at 1:1000 (ab50533; Abcam); Ras-related protein Rab-11 (Rab11) at 1:250 (#610656; BD Biosciences); Lysosome-associated membrane protein-1 (LAMP1) at 1:250 (#sc 2011; Santa Cruz); Tropomyosin receptor kinase B (TRKB; # ab18987; abcam) at 1:1000, GLUA1(# MAB2263; Millipore sigma) at 1:500 and VPS35 (Abcam; #ab97545) at 1:500. DAPI was used at a final concentration of 0.1 µg/ml (Alfa Aesar).
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5

Comprehensive Antibody Reference for Research

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The following antibodies were used in this study: anti-b-Actin (mouse monoclonal, Sigma-Aldrich, clone AC-15, A5441, 1:10,000), Anti-EGFR (rabbit monoclonal, Abcam, ab52894, 1:1000), Anti-Gephyrin (mouse monoclonal, Synaptic Systems, clone mAb7a, 147 021, 1:1000) Anti-GFP (chicken polyclonal, Abcam, ab13970, 1:600), Anti-GFP (rat monoclonal, ChromoTek, 3H9, 1:5000), Anti-GluA2 (rabbit polyclonal, Synaptic Systems, 182 103, 1:1000), Anti-GST (goat polyclonal, GE Healthcare, 27-4577-01, 1:10,000), Anti-HA (mouse monoclonal, Sigma-Aldrich, clone HA-7, H3663, 1:1000), Anti-HA (rabbit polyclonal, Sigma Aldrich, H6908, 1:100), Anti-LAMP1 (rabbit polyclonal, Abcam, ab24170, 1:1000), Anti-NLG1 (mouse monoclonal, Neuromab, N97A/31, 1:500), Anti-NLG2 (mouse monoclonal, Synaptic Systems, clone 5E6, 129 511, 1:2000 WB, 1:600 ICC), Anti-NLG3 (mouse monoclonal, Neuromab, N110/29, 1:500), Anti-GluN1 (rabbit monoclonal, Cell Signaling, D65B7 5704, 1:2000), Anti-SNX27 (mouse monoclonal, Abcam, clone 1C6, ab77799, 1:1000), Anti-SNX27 (rabbit polyclonal, a kind gift from Dr Martin Playford (NIH, USA), 1:2000), Anti-VPS35 (rabbit polyclonal, Abcam, ab97545, 1:2000).
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