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Antibiotic discs

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Antibiotic discs are a type of laboratory equipment used in microbiology. These discs are impregnated with specific antibiotics and are placed on agar plates seeded with bacterial cultures. The antibiotic diffuses into the agar, creating a zone of inhibition around the disc, which can be measured to determine the susceptibility of the bacteria to the tested antibiotic.

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10 protocols using antibiotic discs

1

Antimicrobial Susceptibility Testing Protocol

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The antimicrobial susceptibility testing was done using the Kirby-Bauer disc diffusion method on Mueller Hinton Agar (Becton, Dickinson and Company, MD, USA) based on the Clinical Laboratory Standard Institute (CLSI) guidelines [18 ]. The antibiotic discs (Becton, Dickinson and Company, MD, USA) used included ampicillin (10 μg), sulfamethoxazole/trimethoprim (1.25/23.75 μg), streptomycin (300 μg), ciprofloxacin (5 μg), tetracycline (30 μg), gentamicin (10 μg), nalidixic acid (30 μg), chloramphenicol (30 μg), ceftazidime (30 μg), norfloxacin (10 μg), and cefotaxime (30 μg). The phenotypic confirmation of ESBL isolates was done by the combination of disc approximation method using either ceftazidime (30 μg) or cefotaxime (30 μg) alone followed by overnight incubation at 37°C for 18–24 hrs. Interpretation of susceptibility patterns on other antimicrobial discs was done using guidelines laid down in the CLSI, which provides break points corresponding to zone of inhibition diameter. An increase in antibiotic zone diameter (5–12 mm) for either ceftazidime or cefotaxime indicated ESBL production [10 (link), 18 ]. Quality control standard laboratory procedures were strictly adhered to, to avoid contamination. Escherichia coli ATCC 25922 was used as a quality control organism.
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2

MIC Evaluation of CR-KP Antibiotics

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The experimental procedures strictly followed the twofold dilution method recommended by the CLSI Clinical Laboratory Standardization Association to measure the MIC value of CR-KP. The final concentration gradient of each drug in the experiment was 256, 128, 64, 32, 16, 8, 4, 2, 1, 0.5, 0.25, 0.125, 0.06, and 0.03 mg/L. The inoculum machine took 1 mL of the prepared inoculum and added it to each test tube to prepare the final bacterial solution concentration of 104 CFU/mL. The inoculated dilution tube was stoppered and incubated overnight in an ordinary air incubator at 35°C. The VITEK automatic analyzer was used for drug susceptibility detection. The supporting drug-sensitive cards include amoxicillin, aztreonam, compound sulfamethoxazole, cefoperazone sulbactam, ampicillin, cefepime, cefuroxime, imipenem, piperacillin, levofloxacin, amikacin, cefazolin, cefotaxime, ceftazidime, ceftriaxone, gentamicin, tetracycline, meropenem, ciprofloxacin, tobramycin, and minocycline. Antibiotic discs were purchased from Becton Dickinson, USA.
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3

Antimicrobial Susceptibility Testing using Novel Agents

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Four antimicrobial agents: cefepime (Bristol-Myers Squibb), ceftazidime (Polpharma), cefotaxime (Sigma), ceftriaxone (the Institute of Biotechnology and Antibiotics, Warsaw) and ofloxacin (Sigma), as well as EPI Phe-Arg-β-naphthylamide (PAβN; Sigma), were used in the study to determine the MIC values of antimicrobial agents ± EPI. Detection of ESβL production by Gram-negative rods was determined using antibiotic discs from Becton Dickinson. For the selection of transformants and transconjugants during construction of the P. aeruginosa PAO1161 ΔampC mutant, ampicillin (Sigma), carbenicillin (Sigma), rifampicin (Sigma), isopropyl-β-D-thiogalactopyranoside (Sigma) and 5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside (Sigma) were used.
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4

Antibiotic Susceptibility Testing Protocol

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Antibiotic susceptibility was tested with the disc diffusion method in accordance with the European Committee on Antimicrobial Susceptibility Testing (EUCAST 2019) protocol. Briefly, bacterial suspensions (0•5 Mcfarland standard) were applied to an MHA plate and spread evenly using a sterile cotton swab (Fisher Scientific, Loughborough, UK). The antibiotic discs (Beckton Dickinson, Wokingham, UK) were placed onto the agar surface and plates were incubated (24 h; 37°C). Following incubation, zone diameters of growth inhibition were recorded and compared to EUCAST breakpoints (EUCAST 2019) to confirm clinical susceptibility. To investigate for antibiotic cross-resistance following exposure to the test antibiotics, the bacteria were tested against a panel of 6-8 EUCAST recommended antibiotics from different classes (Table 1). Baseline antibiotic susceptibility profiles and clinical resistance status of tested isolates are presented in Table S1.
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5

Antibiotic Resistance Profiling of Isolates

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AMR profile of all the isolates is given in Table S1. All these isolates, except P. stuartii, are from patients with acute diarrhea. Relevant characteristics recombinant plasmids used in this study are listed in Supl. Table S5B. Bacterial isolates were grown under shaking or static conditions at 37 °C in Luria-Bertani (LB) or Mueller-Hinton (MH) Agar medium (Sigma, USA). Different antibiotic discs (BD, USA) or solutions used in this study are mentioned in Supl. Table S5D. Expressions of different genes encoding antibiotic resistance were under the regulation from an arabinose-inducible promoter.
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6

Polymyxin B Sensitivity Assay

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Sensitivity to polymyxin B was assessed by assays of the zone of clearance. One-hundred-microgram aliquots of polymyxin B (Sigma) were applied to 1/4-in. sterile blank cellulose antibiotic susceptibility discs. The following antibiotic discs (BD) were used to determine the general sensitivity of the strains: tetracycline, 30 μg; ciprofloxacin, 5 μg; nalidixic acid, 30 μg; erythromycin, 15 μg; and gentamicin, 10 μg. Log-phase cultures were spread plated onto LB plus 2% NaCl and allowed to dry for 10 min, antibiotic discs were applied, and the plates were incubated at 30°C overnight. The assay was performed in duplicate or triplicate, followed by measurement of the zones of clearance by use of calipers.
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7

Antibiotic Resistance of L. plantarum

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The antibiotic resistance of L. plantarum O1 was tested on MRS agar (Biolife) using the agar disc diffusion method as described by Frece et al. (13 (link)). The following antibiotic discs (BD-Becton, Dickinson and Company, Franklin Lakes, NJ, USA) were used: clindamycin (2 μg); neomycin, methicillin and erythromycin (5 μg each); tobramycin, lincomycin and ampicillin (10 μg each); chloramphenicol, gentamycin, vancomycin, rifampicin and tetracycline (30 μg each). Appearance of transparent zone around grown colonies was a sign of antibiotic sensitivity.
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8

Antimicrobial Susceptibility of Lactic Acid Bacteria

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The antimicrobial susceptibilities of the five selected LAB isolates were determined using the disc diffusion method on MRS agar modified from the method described by the Clinical and Laboratory Standards Institute (CLSI, 2012 ). Antibiotic discs (BD, Sparks, MD, USA) consisting of ampicillin (10 μg), gentamicin (10 μg), kanamycin (30 μg), streptomycin (10 μg), erythromycin (15 μg), clindamycin (2 μg), tetracycline (30 μg), and chloramphenicol (30 μg), were used for the susceptibility determination. Inhibition zone diameters were interpreted according to Charteris et al. (1998) (link).
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9

Antibiotic Susceptibility Testing Protocol

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Antibiotic susceptibility testing (AST) was performed by Kirby–Bauer disk diffusion method (26 (link)) using 19 different antibiotic discs (BD Diagnostics, USA), namely ampicillin (10 µg), amoxicillin-clavulanate (20/10 µg), ampicillin-sulbactam (100/10 µg), piperacillin-tazobactam (100/10 µg), chloramphenicol (30 µg), tetracycline (30 µg), trimethoprim-sulfamethoxazole (1.25/23.75 µg), cefepime (30 µg), cefotaxime (30 µg), ceftazidime (30 µg), aztreonam (30 µg), imipenem (10 µg), meropenem (10 µg), doripenem (10 µg), ertapenem (10 µg), ciprofloxacin (5 µg), levofloxacin (5 µg), amikacin (30 µg), and gentamicin (10 µg). The broth microdilution method (BMD) was performed (26 (link)) to determine the MIC of the aforesaid antibiotics. Furthermore, MIC was also performed for an additional eight antibiotics (arbekacin, ceftaroline, colistin, polymyxin B, minocycline, doxycycline, biapenem, and ceftazidime-avibactam). The results of AST and MIC were interpreted following the Clinical and Laboratory Standards Institute (CLSI) guideline (CLSI, 2022) (27 ) and EUCAST 2022 (28 ) using E. coli ATCC 25922 strain and Pseudomonas aeruginosa ATCC 27853 as control. MIC50 and MIC90 were estimated as per standard protocol (29 (link)).
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10

Antibiotic Susceptibility of Aquatic Bacteria

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Antibiotic susceptibility was quantified using pre-loaded discs containing different antibiotics as follows: gentamicin (10 μg), tetracycline (30 μg), doxycycline (30 μg), kanamycin (30 μg), streptomycin (10 μg), tobramycin (10 μg), neomycin (30 μg), novobiocin (30 μg), erythromycin (15 μg), and sulfamethoxazole (sulfamethoxazole 23.75 μg + trimethoprim 1.25 μg). In brief, Mueller–Hinton plates were inoculated with 100 μL of overnight cultures of A. hydrophila and C. portucalensis at 37 °C. After 24 h, pre-loaded antibiotic discs from (BD Biosciences, East Rutherford, NJ) were placed on each plate and incubated overnight at 37 °C. After the incubation, the zones of inhibition were evaluated based on the Clinical and Laboratory Standards Institute (CLSI) standards for Enterobacteriaceae [80 ]. In the absence of CLSI data, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) breakpoint recommendations were used [81 ].
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