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3 protocols using sybr green dye

1

Isothermal DNA Amplification Reagent Mix

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Bst 2.0 WarmStart DNA polymerase, MgSO4 (100 mM) and 10 × Thermopol Isothermal buffer containing 200 mM Tris-HCl, 500 mM KCl, 100 mM (NH4)2SO4, 20 mM MgSO4 and 1 % Tween-20 were purchased from New England BioLab (NEB, USA). A 10 mM deoxynucleotide (dNTP) solution was purchased from Vazyme Biotech (China). Eva Green dye was purchased from Biotium Inc. (USA). SYBR Green dye was purchased from Solarbio Science & Technology (China). Tween-20, Triton X-100, dithiothreitol and guanidine hydrochloride were purchased from Sangon Biotech (China).
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2

Quantitative analysis of iNOS and Arg1 mRNA

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Total RNA extracted from the ischemic penumbra was reverse-transcribed into cDNA with a BeyoRT II M-MLV reverse transcriptase kit (Beyotime Biotech Inc., Shanghai, China). Real-time PCR
amplifications were conducted with SYBR Green dye (Solarbio Life Sciences) and analyzed with an ExicyclerTM 96 Real-Time Quantitative Thermal Block (Bioneer, Daejeon, Korea). The
mRNA level of each gene was normalized by GAPDH, and the data were analyzed using the 2−ΔΔCT method. The primer sequences were as follows: forward,
5′-TTGGAGCGAGTTGTGGATTG-3′, and reverse, 5′-GTGAGGGCTTGGCTGAGTGA-3′, for inducible nitric oxide synthase (iNOS); forward, 5′-GGAAGACAGCAGAGGAGGTG-3′, and reverse,
5′-TCAGTCCCTGGCTTATGGTT-3′, for arginase-1 (Arg1).
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3

Quantifying mRNA Levels in Inflammatory Responses

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The messenger RNA (mRNA) levels of tumor necrosis factor‐α (TNF‐α), interleukin‐6 (IL‐6), and TMUB1 were determined by qRT‐PCR. Total RNAs were prepared using TRIpure (BioTeke, China) and reverse‐transcribed using BeyoRT II M‐MLV reverse transcriptase (Beyotime, China). Quantitative PCR was performed using SYBR Green dye (Solarbio, China) to measure amplification on a fluorescence quantitative PCR instrument (Exicycler 96, Bioneer). The sequences of primers were as follows (5′–3′): IL‐6 forward (mus): ATGGCAATTCTGATTGTATG, and reverse (mus): GACTCTGGCTTTGTCTTTCT; TMUB1 forward (mus): GTAGGCGATGAGGTGACTGT, and reverse (mus): GCTGTGCTGGTGTTGTGG; TNF‐α forward (mus): CAGGCGGTGCCTATGTCTCA, and reverse (mus): GCTCCTCCACTTGGTGGTTT; TMUB1 forward (Homo): CCTCGTGCTACGGCTGAAA, and reverse (Homo): GTTGGGAGGGAGGTGAAGG; IL‐6 forward (homo): GTCCAGTTGCCTTCTCCC, and reverse (Homo): GCCTCTTTGCTGCTTTCA; TNF‐α forward (Homo): GAGTGACAAGCCTGTAGCC, and reverse (Homo): AAGAGGACCTGGGAGTAGAT.
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