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Scope 5

Manufactured by Zeiss

The Scope 5 is a high-performance optical microscope designed for laboratory and research applications. It features advanced optics and a user-friendly interface, providing clear and detailed images of samples under observation.

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8 protocols using scope 5

1

Characterization of Fungal Morphology and Growth

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The colony color of each isolate was recorded after culturing on PDA at 25°C for 6 days. Mycelial plugs (5 mm) excised from the margin of 6-day-old colonies were placed at the center of each PDA plate (total five plates), and cultured in darkness at 25°C. The diameter of each colony was measured by cross direction, and its daily growth rate was calculated. The experiment was repeated three times. A small amount of mycelia was scraped from 10-day-old colonies to observe the mycelial appressorium. Hyphal tips were sampled from the agar, transferred to fresh PDA plates, and incubated at 25°C for 10 days to induce the formation of conidia. Appressoria were induced as described previously (Cai et al., 2009 ). Using a compound light microscope (Zeiss Scope 5 with camera AxioCam 208 color), the shape and size of mycelial appressorium, conidia, and appressorium were recorded and measured.
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2

Characterization of GUCC2219 Fungal Isolate

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The GUCC2219 isolate was inoculated on two types of different media, PDA and CMA, and cultured at 25 °C for 15 d. Photographs of the colonies, mycelia, and mycelial structures were taken using a stereomicroscope (Keyence VHX-7000 digital microscope). Sections of the fungal colonies were made with the assistance of a stereomicroscope (Leica S9i) and mounted in water. Photomicrographs of conidiophores and conidia were taken using a compound light microscope (Zeiss Scope 5) equipped with an AxioCam 208 color camera.
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3

Fungal Strain Characterization Protocol

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The fungal strains GUCC2212 and GUCC2232 were inoculated on PDA and cultivated for 7 d at 28°C. Colony morphology was documented using a stereomicroscope (Keyence VHX-7000 digital microscope). A compound light microscope (Zeiss Scope 5) equipped with an AxioCam 208 color camera was used to photograph conidiophores and conidia. To determine the mean size, 30 conidiogenous cells, 50 macroconidia, and 50 chlamydospores from each strains were mounted and measured randomly.
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4

Macrostructure and Microscopic Examination of Stromata

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Photographs of fresh stromata were taken using an ultra-depth of field stereomicroscope (digital microscope system Keyence VHX-7000) to illustrate the macrostructures. Sections were made using a stereomicroscope (Leica S9i) and mounted in water or a rehydrated 5% KOH solution. Photomicrographs of perithecia, asci, ascospores, conidiophores, conidia, and phialides were taken with a compound light microscope (Zeiss Scope 5 with color camera AxioCam 208) to observe the morphological characteristics. All measurements of the observed structures were made with ZEN2 (blue edition) software.
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5

Nematode Capture by Fungal Hyphae

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In the preliminary screening, a 5 mm-diameter disc of mycelium was taken from the margin of the fungal isolates, transferred to the center of a Petri dish containing 1% WA, and then incubated in the dark at 25 °C for 2 weeks. After the incubation period, Petri dishes were inoculated with a 1 ml nematode suspension containing 1000 nematodes. The nematode suspension was divided into 4-5 drops and spread uniformly inside the periphery of the fungal colonies. Plates without fungi served as controls. The morphology and the average size of the hyphal rings were observed and recorded. Four replicates of each isolate were utilized. The number of nematodes captured in the hyphal rings was counted using a stereomicroscope (Leica S9i, Germany). Microscopic images were captured with a compound light microscope (Zeiss Scope 5) equipped with an AxioCam 208 color camera.
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6

Fungal-Nematode Interaction Evaluation

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A 5 mm-diameter disc of mycelium was removed from the margins of the fungal isolates, placed to the center of a petri dish containing 1% water agar (WA) and cultured for two weeks in the dark at 25°C. Petri dishes were infected with a 1 mL nematode slurry containing 1000 nematodes after the incubation period. The nematode suspension was separated into 4-5 drops and evenly distributed across the fungal colonies periphery. Control plates were made without fungus. Each strain was tested in four replicates. A compound light microscope (Zeiss Scope 5) with an AxioCam 208 color camera was used to acquire microscopic images.
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7

Fungal Diversity in Guizhou Orchards

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From 2021 to 2022, 94 samples were collected from orchards in six locations of Guizhou Province (Congjiang, Kaiyang, Longli, Luodian, Nayong and Wengan counties), including 10 host species (cherry, loquat, passionfruit, pitaya, plum, pomegranate, Rosa roxburghii, shaddock, tangerines and walnut). To obtain pure cultures, leaf surfaces were disinfected according to Zhang et al. [21 (link)]. Abundant conidia were observed on the surface of the leaf spots examined using a dissecting microscope. Single conidia were picked off the leaves with a sterilized needle and placed on a drip board containing sterilized water. After 12 h, the germination of conidium was observed, and they were then transferred to potato dextrose agar (PDA) and incubated at room temperature (28 °C) for 10 days. Morphological characteristics of the fungi were observed and photographed using a compound light microscope (Zeiss Scope 5) with an attached camera (AxioCam 208 color). All new taxa were registered in the Index Fungorum database (www.indexfungorum.org) (accessed on 13 October 2022). Dried holotype specimens were conserved in the Herbarium of the Department of Plant Pathology, Agricultural College, Guizhou University (HGUP), while cultures were conserved in the Departmental Culture Collection (GUCC).
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8

Microscopic Analysis of Ascomata

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Photographs of the ascomata were taken using a stereomicroscope (Keyence VHX-7000 digital microscope). Observations and photomicrographs were made from material mounted in lactic acid (60%) using a compound light microscope (Zeiss Scope 5) equipped with an AxioCam 208 colour camera with interference contrast optics. All measurements were made with ZEN2 (blue edition) and images used for figures were processed with Adobe Photoshop version 2022 software.
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