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20 protocols using ab283319

1

Immunofluorescent Staining of Rat Spinal Cord

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The L4–L5 spinal cord tissues of three rats in each group were selected and fixed in 10% neutral formalin, dehydrated in ethanol, embedded in wax, and then sectioned at a thickness of 4 µm. Spinal cord sections were dewaxed and incubated overnight at 4 °C with CD80 antibody (1:100, bs-2211R, Bioss, Beijing, China) and Iba-1 antibody (1:100, ab283319, Abcam, Cambridge, UK); CD206 antibody (1:100, DF4149, Affinity, Suzhou, China) and Iba-1 antibody (1:100, ab283319, Abcam, Cambridge, UK) were mixed and incubated overnight at 4 °C; C3 antibody (1:100, DF13224, Affinity, Suzhou, China) and GFAP antibody (1:100, ab279290, Abcam, Cambridge, UK) were mixed and incubated overnight at 4 °C; S100A10 antibody (1:100, bs-8503, Bioss, Beijing, China) and GFAP antibody (1:100, ab279290, Abcam, Cambridge, UK) were mixed and incubated overnight at 4 °C. Goat anti-rabbit IgG H&L (Alexa Flour 488,1:200, ab150077, Abcam, Cambridge, UK) and goat anti-mouse IgG H&L (Alexa Flour 647,1:200, ab150115, Abcam, Cambridge, UK) were used as secondary antibodies. Tissue sections were immunofluorescently stained and then observed under a laser confocal microscope (SP8, Leica, Wetzlar, Germany) and photographed. Fluorescence quantitative analysis was performed by Image J software.
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2

Spinal Cord Microglia Immunostaining

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Rat L4-L6 spinal cord samples were fixed, dehydrated, and frozen in a -80 °C freezer, and cryosectioned at 8 μm thickness for subsequent studies. The removed sections were dried for 10 min and rinsed thrice with phosphate-buffered saline (PBS) for 10 min each. Sections were rinsed thrice for 10 min each after breaking the membranes with 0.5% Triton for 2 h. Following repair using citrate solution, sections were naturally cooled and then rinsed thrice for 10 min each. Subsequently, sections was blocked with 2% bovine serum albumin and incubated overnight with following primary antibodies: anti-ionized calcium-binding adaptor molecule-1 (Iba-1) (red; 1:100, ab283319, Abcam, Cambridge, UK), anti-DNMT1 (green; 1:250, ab188453, Abcam), anti-iNOS (green; 1:250, ab178945, ab283319, Abcam), anti-Arg-1 (green; 1:200, ab96183, Abcam) at 4 °C, followed by washing with 0.01 moL/L PBS. Afterwards, sections were reacted for 1 h with secondary antibody immunoglobulin G (IgG, 1:2000, ab205718, Abcam) at 37 °C under dark conditions, and then washed. Following staining the nuclei with Hoechst for 10 min, sections were rinsed five times for 10 min each. The expression and localization of DNMT1, iNOS, and Arg-1 in microglia were determined after mounting using glycerol, with Iba-1 as a marker of microglia.
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3

Immunohistochemical analysis of mouse brain

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The mice were deeply anesthetized with sodium pentobarbital via intraperitoneal injection at a dose of 60 mg/kg. Afterwards, the mice were perfused with cold PBS for 5 min, followed by 4% paraformaldehyde solution for 15 min. Then, the brains were excised and postfixed overnight in 4% paraformaldehyde at 4 ℃ and dehydrated in 30% sucrose–PBS. The brains were mounted in optimal cutting temperature embedding medium, frozen and cut coronally at a 40 μm thickness on a cryostat. Next, the brain slices were fixed with 4% paraformaldehyde for another 10 min and incubated with 0.3% Triton X-100 for 10 min, followed by blocking with 10% normal donkey serum containing 0.1% Triton X-100 for 60 min at room temperature. Afterwards, the brain sections were incubated overnight at 4 ℃ with the following primary antibodies: mouse anti-NeuN monoclonal antibody (Proteintech, 66836-1-Ig), mouse anti-Iba1 monoclonal antibody (Abcam, ab283319) and rabbit anti-Smad7 polyclonal antibody (Proteintech, 25840-1-AP). After being washed three times in PBS, the brain sections were incubated with secondary antibodies conjugated with Alexa 488 or 555 for 60 min at room temperature. The slices were mounted with Antifade Mounting Medium containing DAPI (Beyotime, China) and observed using a laser scanning confocal microscope (Leica CM DMI8).
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4

Spinal Cord Cell Ferroptosis Profiling

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The expression of NeuN (Abcam, ab279296, 1:1000) and ACSL4 (Abcam, ab155282, 1:100) in the spinal cord was determined by IF staining, as previously described.
26 (link) Moreover, to identify the type of cell undergoing ferroptosis, co‐staining of the biomarkers of microglia (Iba‐1), astrocytes (GFAP) or neurons (NeuN) with GPX4 were performed. Paraffin sections (4 μm thick) of the spinal cord were treated with primary antibodies anti‐rabbit GPX4 (Abcam, ab125066, 1:200) and anti‐mouse antibodies NeuN (Abcam, ab279296, 1:1000) or anti‐mouse Iba‐1 (Abcam, ab283319, 1:100) or anti‐chicken GFAP (Abcam, ab4674, 1:1000) overnight at 4°C, then incubated with fluorescent‐labelled secondary antibodies for 1 hour, and counterstained with DAPI. Finally, the sections were scanned using an Olympus VS120 whole slide imager.
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5

Immunohistochemistry and Western Blot Analysis

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The fixation of brain tissue samples was performed using a 4% paraformaldehyde solution. Then the tissues were dehydrated with 20% and 30% sucrose and cut into 10 µm thick slices. The slices were blocked with 5% goat serum for a duration of 2 h. Antibody against Iba‐1 (1:500; Abcam, ab283319) was applied to incubate brain slices overnight, following a fluorescein isothiocyanate (FITC)‐labeled secondary antibody was utilized to incubate brain slices for 2 h. The resulting fluorescent images were captured using Leica DMI3000B fluorescence microscopy. For western blot, RIPA lysis buffer (Beyotime, P0013B) containing protease inhibitor cocktail (Bimake, B15001) was utilized to extract total proteins from both tissues and cells. The protein concentration in each sample was determined using the BCA protein assay kit (Beyotime, P0011). Subsequently, the proteins were separated using SDS‐PAGE gels and transferred onto PVDF membranes (Immobilon‐P, IPVH00010). Anti‐GSS (abcam, ab133592), GPX4 (abcam, ab125066), iNOS (abcam, ab3523) or β‐actin (abcam, ab8227) was used to incubate the membranes at 4 °C overnight, then incubated with peroxidase‐conjugated secondary antibody for 1 h at room temperature. Protein levels were normalized to β‐actin. Image Lab software was used to acquire and analyze blot images.
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6

Immunohistochemical Analysis of Apoptosis Markers

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The method used to prepare the tissue sections was the same as that used for Nissl staining. Subsequently, ethylenediaminetetraacetic acid (pH 8.0) was used for antigen retrieval at RT, after which the sections were washed with PBS (pH 7.4). Subsequently, the sections were incubated in an autofluorescence quencher agent reagent (cat. no. G1221; Wuhan Servicebio Technology Co., Ltd.) for 5 min at RT, rinsed with running water for 10 min, and then incubated with 5% BSA for 30 min at RT to block nonspecific reactions. Next, the sections were incubated with anti-active caspase-3, anti-Bax, anti-Bcl-2, anti-NLRP3, anti-ASC, anti-caspase-1 p20, anti-NeuN (cat. no. bs-10394R; BIOSS) and anti-Iba-1 [ab283319, Abcam (all 1:500)] antibodies for 15 h at 4°C. Then, the sections were washed 3 times with PBS and subsequently incubated with the associated secondary antibodies (all 1:1,000) for 90 min at RT. Finally, the sections were covered with a sealer containing DAPI, imaged using Pannoramic DESK, p-MIDI, p250 and analyzed using ImageJ 8.0 software.
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7

Microglial Immunostaining Protocol

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Microglial were fixed with 4% PFA and permeabilized with 0.3% Triton X-100. The slides were blocked with 1% BSA, and incubated with anti-CD16/CD32 (1:100, ab171202, Abcam, Cambridge, UK), anti-CD206 (1:100, PA5-101657, Invitrogen), anti-IBA1 (1:100, ab283319, Abcam) or anti-FOXO1 (1:100, ab52857) antibodies at 4 °C overnight. This is followed by the incubation with Alexa Fluor 488- and Alexa Fluor 555-conjugated secondary antibodies. The slides were then mounted with Prolong Gold antifade mountant (Invitrogen) and observed under a confocal microscope (Nikon). To check for the non-specific staining, primary antibody was omitted as a negative control. No signal was detected without the incubation of primary antibody (Fig. S3B).
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8

Immunohistochemical Analysis of Inflammatory Markers

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The immunohistochemical experiments were conducted as previously described [25 (link)]. The antibodies used in this study included an anti-Iba1 antibody (1:50; ab178846; ab283319; Abcam, MA, USA), an anti-CD86 antibody (1:200; ab220188; Abcam, MA, USA), anti-IL-1β antibody (1:200; ab254360; Abcam, MA, USA), anti-TNF-α antibody (1:150; ab1793; Abcam, MA, USA), anti-IL-6 antibody (1:200; ab290735; Abcam, MA, USA), anti-ERα antibody (1:200; ab32063; Abcam, MA, USA), anti-GPER antibody (1:200; PA5-77396; Invitrogen, Karlsruhe, Germany), anti-ERβ antibody (1:150; PA1-311; Thermo Fisher Scientific, Shanghai, China), anti-NF-κB p65 antibody (1:200; ab32536; Abcam, MA, USA), anti-COX1 antibody (1:500; ab109025; Abcam, MA, USA), anti-CB1 antibody (1:200; ab3558; Abcam, MA, USA), anti-IL-1 (1:200; ab254360; Abcam, MA, USA), Alexa Fluor 488 secondary antibody (1:1,000; Invitrogen, Karlsruhe, Germany), Alexa Fluor 594 secondary antibody (1:1,000; Invitrogen), and IgG H&L (HRP) antibody (1:500; ab97051; Abcam, MA, USA). The nuclei were stained with DAPI (Sigma-Aldrich, Beijing, China) and images were captured on the LSM700 laser scanning confocal microscope (Zeiss, Tokyo, Japan) with the mean fluorescence intensities (MFI) determined using the FlowJo software [26 (link)].
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9

Immunofluorescence Analysis of Retinal Tissue and Cells

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For immunofluorescence staining, mice were sacrificed, perfused with 4% paraformaldehyde (PFA), and eyeballs fixed overnight in 4% PFA at 4°C. After fixation, they were dehydrated by 25% sucrose, frozen at −80°C, embedded in optimal cutting temperature compound, and sectioned into 5 µm sections with a cryostat. As for cells, they were grown on glass coverslips in 24-well plates, washed 3 times in PBS, and fixed with 4% PFA for 30 min at room temperature. Retinal tissue sections or cells were then blocked in 0.5% goat serum for 1 h and incubated with the following primary antibodies overnight at 4°C: LC3B (1:100; ab18709, Abcam, USA), p62 (1:100; 39749S, Cell Signaling Technology, USA), ionized calcium-binding adaptor molecule-1 (Iba-1, 1:100; ab283319, Abcam, UK), CD16/32 (1:100; ab223200, Abcam, UK), Arg-1 (1:100; sc-271430, Santa Cruz, USA), and NeuN (1:100; ab134014, Abcam, UK). Afterwards, tissue sections or cells were incubated with Alexa Fluor 488- or 594-conjugated secondary antibodies for 1 h at room temperature. Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) for 5 min. Images were obtained with either a fluorescence microscope, or a CLSM, and quantified with ImageJ software.
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10

Double Immunofluorescence Staining of Brain Tissue

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Double Immunofluorescence staining was conducted on the sections of fixed frozen brains as previously described (19 (link), 20 (link)). The 8-μm thick slides were rinsed using phosphate-buffered saline (PBS), followed by permeabilization using 0.3% Triton X-100 for 15 min at RT. Next, the slides were incubated with blocking solution (95% PBS, 5% normal donkey serum, and 0.05% Triton X-100) for 2 h. Next, the slides were incubated using the following: mouse anti-Iba1 (ab283319, 1:200, Abcam, USA), rabbit anti-GFAP (ab254082, 1:50, Abcam, USA), rabbit anti-APN (ab181281, 1:50, Abcam, USA), rabbit anti-AdipoR1 (ab70362, 1:100, Abcam, USA), mouse anti-NeuN (ab104224, 1:200, Abcam, USA), rabbit anti-IL-6 (ab179570, 1:100, Abcam, USA), rabbit anti-CD68 (ab283654, 1:100, Abcam, USA), anti-hemoglobin (ab251919, 1:100, Abcam, USA) or rabbit anti-CD206 (ab64693, 1:100, Abcam, USA) at 4°C overnight. After using PBS to wash the slides three times (10 min each time), the sections were incubated using the appropriate fluorescent secondary antibodies (diluted 1:200) (Jackson Immuno Research, West Grove, PA, USA) and counterstained with DAPI (SKU: H-1200-10, Vector Laboratories, Newark, CA, USA). All counts and quantifications were conducted blindly (19 (link), 21 (link)).
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