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11 protocols using pclamp software suite

1

Miniature EPSC Recording Protocol

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Following break-in, mEPSCs were recorded for 15–20 min at a holding potential of −70 mV in the presence of 1 μM tetrodotoxin, which blocks evoked synaptic transmission. Only mEPSCs beginning 5 min after break-in were analysed. Recordings were rejected if the holding current or series resistance varied by more than 25% during the recording. Samples are represented by the total number of cells from more than five mice per group. Raw data were analysed using Clampfit (pClamp software suite version 10.2; Molecular Devices). Statistical analysis was performed using GraphPad Prism.
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2

Patch-Clamp Recording of TRPV4 Channels

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CosM6 cells were transfected with 1–2 μg of wild type or truncated constructs using FuGENE6 (Promega) and used for patching within 1–2 days after transfection. Symmetric internal potassium (Kint, 140 mM KCl, 1 mM EGTA, 1 mM K2EDTA, 4 mM K2HPO4, pH 7.38) or cesium (Csint, 150 mM CsCl, 1 mM EGTA, 1 mM K2EDTA, 5 mM Hepes, pH 7.38) buffers were used for single-channel recordings. Upon patch excision in the inside-out configuration, the bath was perfused with Kint or Csint containing GSK101 (10 nM to 5μM), so that the drug was applied from the cytoplasmic side of the membrane. For experiments with divalent ions (Ca2+ and Ba2+), cells were patched in symmetric buffer (75 mM CaCl2 or BaCl2 respectively with 5 mM Hepes, pH 7.3). Upon patch excision the bath was perfused with Kint including 10 nM of GSK101. Recordings were made and digitized with the Axopatch 1D patch-clamp amplifier and the Digidata 1200 digitizer (Molecular Devices). Data were collected at 10 kHz, low-pass filtered at 5 kHz and analyzed with the pClamp software suite (Molecular Devices). The pipettes with bubble number (BN)84 (link) 4.5 – 5.0 (~ 2 M Ohm in symmetric Kint) were fabricated from the Kimble Chase soda lime glass with a Sutter P-86 puller (Sutter Instruments). All measurements were carried out at −30 mV membrane potential or as specified in the text.
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3

Patch-Clamp Analysis of Kir2.2 Mutants

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CosM6 cells were transfected with 1–2 µg of pcDNA3.1-Kir2.2-K62W or pcDNA3.1-Kir2.2-K62W-G178D mutants with an addition of 0.4 µg of pcDNA3.1-GFP per 35-mm Petri dish using FuGENE6 (Promega). The cells were used for patching within 1–2 d after transfection. For patch-clamp experiments, symmetrical internal potassium buffer (Kint) was used: 148 mM KCl, 1 mM EGTA, 1 mM K2EDTA, and 10 mM HEPES, pH 7.4. Data were acquired at 15 kHz, low-pass filtered at 5 kHz with Axopatch 1D patch-clamp amplifier, and digitized with Digidata 1320 digitizer (Molecular Devices). Data analysis was performed using the pClamp software suite (Molecular Devices). Pipettes with bubble number (Schnorf et al., 1994 (link)) 4.0–5.0 (∼2–4 MOhm in symmetric Kint) were pulled from Kimble Chase 2502 soda lime glass with a Sutter P-86 puller (Sutter Instruments). All measurements were performed on excised inside-out patches at −120 mV membrane potential, or as specified in the text.
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4

Electrophysiological Analysis of Channel Kinetics

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Open probabilities (Po) were determined using the pClamp software suite (Molecular Devices, Sunnyvale, CA). Statistical analyses were performed in Origin 7.0 (OriginLab, Northampton, MA) and in Excel (Microsoft, Redmond, WA). Results were expressed as mean ± standard error (SE). Relative Po data were calculated by normalizing each data point to their own control. Statistical significance of differences was evaluated by using the independent two-sample t-test. Differences were considered significant when p was less than 0.05 (marked by *). The number of observations is displayed in the figure.
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5

Kir2.2 and Kir2.1 Channel Characterization

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CosM6 cells (originally derived from monkey kidneys) were transfected with 0.3-1 µg of pCDNA3.1-Kir2.2 and pCDNA3.1-Kir2.1 constructs with an addition of 0.4 µg of pcDNA3.1-GFP per 35 mm Petri dish using FuGENE6 (Promega). The cells were used for patching within 12–48 h after transfection. For patch-clamp experiments, symmetrical internal potassium buffers (Kint) were used: 148 mM KCl, 1 mM EGTA, 1 mM K2EDTA, 10 mM HEPES (pH 6.8, 7.1, 7.4, 7.7) or 10 mM MES (pH 6.2, 6.5) or MOPS (pH 8.0, 8.6). Data were acquired at 3 kHz, low-pass filtered at 1 kHz with Axopatch 1D patch-clamp amplifier and digitized with Digidata 1320 digitizer (Molecular Devices). Data analysis was performed using the pClamp software suite (Molecular Devices). Pipettes with resistance of ~ 2–8 MOhm in symmetric Kint were pulled from Kimble Chase 2502 soda lime glass with a Sutter P-86 puller (Sutter Instruments). All measurements were carried out on excised inside-out patches at −120 mV membrane potential, or as specified in the text.
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6

Neuron Reconstruction and Analysis

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Raw traces were acquired, offline filtered to 1 KHz, and analyzed with the pClamp software suite (v. 10.7, Molecular Devices). Neuron reconstructions were performed using ShuTu dendrite tracing software (http://personal.psu.edu/dzj2/ShuTu/) and the Sholl Analysis plug-in for FIJI/ImageJ (50 (link)). Statistics and plotting were performed with OriginLab Pro 2017.
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7

Patch-clamp Characterization of MscK Tension Sensitivity

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For the patch-clamp experiments, symmetric KCl or NaCl buffers were used (200 mM KCl or NaCl, 90 mM MgCl2, 2 mM CaCl2, 5 mM HEPES, pH 7.2) with bath solution supplemented with 400 mM sucrose. Upon patch excision from the spheroplast membrane (inside-out configuration), suction was manually applied to the pipette via syringe in order to generate lateral tension in a membrane. Recordings were made and digitized with the Axopatch 1D patch-clamp amplifier, the Digidata 1320 digitizer (Molecular Devices), and the PM-015R pressure monitor (World Precision Instruments). Data were collected at 1 kHz, lowpass filtered at 200 or 500 Hz, and analyzed with the pClamp software suite (Molecular Devices). The pipettes with ~1–2 MΩ resistance were fabricated from the Kimble Chase soda lime glass with a Sutter P-96 puller (Sutter Instruments). All measurements were carried out at −30 mV membrane potential or as specified in the text.
Tension sensitivity of the WT MscK and mutants was assayed using the ratio of PMcsL/PMscK, which was calculated as the ratio of pressures at which the first MscL and MscK channels were activated, respectively, in response to a slow ~4 mmHg s−1 pressure ramp. Higher PMcsL/PMscK ratio indicated higher tension sensitivity of a given EcMscK construct with respect to endogenous EcMscL, which was used as an internal calibration.
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8

Reconstitution of CFTR in Synthetic Bilayers

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Synthetic planar lipid bilayers were made by painting a 1,2-dioleoyl-sn-glycero-3-phosphoetanolamine, 1-palmitoyl-2-oleyl-sn-glycero-3-phosphocholine and 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-l-serine 2:1:1 (w/w/w) lipid mixture solubilized in decane across an approximately 100-µm-diameter hole on a plastic transparency. CFTR-containing proteoliposomes were phosphorylated with PKA (NEB) for 1 h at 25 °C, and then fused with the synthetic bilayers. Currents were recorded at 25 °C in symmetric buffer containing 150 mM NaCl, 2 mM MgCl2 and 20 mM HEPES (pH 7.2 with NaOH), supplemented with ATP as indicated. Unless otherwise indicated voltage was clamped at 150 mV with an Axopatch 200B amplifier (Molecular Devices). Currents were low-pass filtered at 1 kHz, digitized at 20 kHz with a Digidata 1440A digitizer and recorded using the pCLAMP software suite (Molecular Devices). All displayed recordings were further low-pass filtered at 100 Hz. Data were analysed with Clampfit, GraphPad Prism and OriginPro.
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9

Measuring Field EPSP Input-Output Curves

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Field EPSPs (fEPSPs) were generated by a 100-μs biphasic pulse through a monopolar nickel dichromate stimulating electrode as previously described (Speed et al., 2015 (link)). The stimulating and glass recording electrodes (1–2 MΩ) were placed laterally in the stratum radiatum 400–500 μm apart. Data were collected using Model 2100 stimulus isolators and Model 1800 amplifiers (A-M Systems) at 10 kHz sample rate with a 1- to 5-kHz high-pass filter. Data were acquired and analyzed using the pClamp software suite (v 10.3, Molecular Devices), Prism (v 6.0, GraphPad), and Statistica (v 13, Dell Inc).
After a stable 20-min baseline was achieved at 0.05 Hz, input/output (I/O) curves were measured over a range of stimulus intensities (0–350 μA) in 50-μA increments at 0.05 Hz. The maximum slope (10–90%) of the fEPSP was analyzed at eight different stimulus intensities with five repetitions at each stimulus intensity. All recordings were performed at 32°C with an average of two to three slices per mouse. Data were analyzed using two-way rmANOVA with genotype the between-subject factor and stimulus intensity as a within-subject factor.
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10

Kir2.2 and Kir2.1 Transfection in CosM6 or HEK293 Cells

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CosM6 or HEK293 cells were transfected with 0.3-1 μg of pCDNA3.1-Kir2.2 and pCDNA3.1-Kir2.1 constructs with an addition of 0.4 μg of pcDNA3.1-GFP per 35mm Petri dish using FuGENE6 (Promega). The cells were used for patching within 12-48 hours after transfection. For patch-clamp experiments, symmetrical internal potassium buffers (Kint) were used: 148 mM KCl, 1 mM EGTA, 1 mM K2EDTA, 10 mM HEPES (pH 6.8, 7.1, 7.4, 7.7) or 10 mM MES (pH 6.2, 6.5) or MOPS (pH 8.0, 8.6). Data were acquired at 3 kHz, low-pass filtered at 1 kHz with Axopatch 1D patch-clamp amplifier and digitized with Digidata 1320 digitizer (Molecular Devices). Data analysis was performed using the pClamp software suite (Molecular Devices). Pipettes with resistance of ~ 2-8 MOhm in symmetric Kint were pulled from Kimble Chase 2502 soda lime glass with a Sutter P-86 puller (Sutter Instruments). All measurements were carried out on excised inside-out patches at −120 mV membrane potential, or as specified in the text.
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