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6 protocols using gold nanoparticles aunps

1

Formaldehyde Dehydrogenase Assay with AuNPs

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Formaldehyde dehydrogenase (EC 1.2.1.46) collected from Pseudomonas putida (specific activity 1.6 U/mg) and β-nicotinamide adenine nucleotide (NAD+) obtained from Sigma (Spruce Street, St. Louis, USA). Methylene blue (MB) was purchased from Sigma (Spruce Street, St. Louis, USA). Formaldehyde (37%) and acetic acid were purchased from Merck company. Gold nanoparticles (AuNPs) and ionic liquid [EMIM][OTF] were purchased from Sigma (Spruce Street, St. Louis, USA). All chemicals used in the experiments were analytical reagent grade. Deionized water was obtained from a Millipore Milli-Q purification system. The Malabar Red Snapper (Lutjanus malabaricus) and Longtail Tuna (Thunnus Tonggol) samples were collected from the three different local wet markets in Kota Kinabalu, Sabah, Malaysia.
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2

Aptamer-Based Thrombin Detection

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The aptamer for thrombin was purchased from Sangon Biotechnology Co., Ltd. (Shanghai, People’s Republic of China) with high-performance liquid chromatography purification and mass spectrometry confirmation. The complementary sequence of thrombin aptamer modified with thiol used in this study is as follows: 5′-thiol–AGTCACCCCAACCTGCCCTACCACGGACT-3′. The underlined sequences can have a hairpin-like structure.
Thrombin-binding aptamer was as follows: 5′-AAAA GTCCGTG GTAGGGCA GGTTGGGGTGA CT-FAM-3′. The underlined sequences can be easily recognized by RecJf Exo.
Human α-thrombin with purity more than 95%, was obtained from Haematologic Technologies Inc (Essex, VT, USA). Exo was purchased from New England Biolabs (Beijing) Ltd (Beijing, People’s Republic of China). Gold nanoparticles (AuNPs) with an average diameter of 13±2 nm along with Tween 80 and other proteins were purchased from Sigma-Aldrich Chemical Co. (Shanghai, People’s Republic of China). All solutions that were used in the experiments were prepared with Milli-Q water (18.2 MΩ⋅cm). Human blood serum samples were obtained from Affiliated Hospital of Jiangsu University.
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3

Colorimetric Detection of Biomolecules

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GDNF and rabbit anti-GDNF polyclonal antibody, bovine serum albumin (BSA), streptavidin, and gold nanoparticles (AuNPs) (5 nm, 10 nm, and 20 nm) were purchased from Sigma-Aldrich (Steinheim, Germany). The polymerase Klenow fragment exo- and deoxynucleoside triphosphates (dNTPs) were obtained from New England Biolabs (Ipswich, MA, USA). Other chemicals were purchased from standard commercial sources and were of analytical grade. All buffer solutions used in this study were prepared in our laboratory with ultrapure water.
The oligonucleotide sequences were synthesized and purified through high-performance liquid chromatography by Shanghai Sangon Biological Engineering Technology & Services Co. Ltd (Shanghai, People’s Republic of China). The oligonucleotide sequences are listed in Table 1.
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4

Nanoparticle-Assisted Pollutant Removal

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Acrylamide (AM), itaconic acid (IA), potassium persulfate (KPS), N,N’-methylenebisAcrylamide (Bis-A), silicone oil, cyclohexane, chloroform, sorbitan monooleate (Span-80), polyoxyethylene-60-sorbitan monooleate (Tween-60), and Gold nanoparticles (Au NPs) were purchased from Sigma-Aldrich. Luria-Bertani broth (LBB), Luria-Bertani agar (LBA), tryptic soy broth (TSB), and tryptic soy agar (TSA) were purchased from Fisher Scientific. Methyl orange (MO) was purchased from Baker Analyzed TM. All chemicals are used as received. Microbial strains were purchased from ATCC.
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5

DNA Immobilization and Electrochemical Sensors

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Synthetic oligonucleotides, calf-thymus DNA (CT-DNA) and the reagents (3-aminopropyl)triethoxysilane (APTES, 99%), glutaraldehyde, DNA, gold nanoparticles (AuNPs, <100 nm diameter), potassium chloride (KCl), ferrocene, maleic acid, ammonium thiocyanate) were supplied by Sigma Aldrich. The dihydrogen phosphate (KH2PO4) and potassium ferricyanide (K3[Fe(CN)6]) chemicals were received from Merck, tetraethyl orthosilicate (TEOS, 98%) was obtained from Fluka, ammonia (25%) and ethanol (95%) from Systerm. Besides, dipotassium hydrogen phosphate (K2HPO4) was supplied by BDH Laboratory Supplies. MilliQ-deionized water was used to prepare all standard buffer and chemical solutions. The DNA oligonucleotide sequences used in the present research:
Porcine DNA probe (100 OD): 5′-CTG ATA GTA GAT TTG TGA TGA CCG TAG [AmC3]
Complementary Porcine DNA: 5′-CTA CGG TCA TCA CAA ATC TAC TAT CAG
Beef taurusa cytb: 5′-CAT AGC AAT TGC CAT AGT CCA CCCTA
Gallus gallus cytb: 5′-CGC AGG TAT TAC TAT CAT CCA CC
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6

Pesticide Detection using Gold Nanoparticles

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Fenthion (FEN), malathion (MAL), dimethoate (DMT), ethanol (99.8%), methanol, hydrochloric acid (HCL), acetonitrile, gold nanoparticles (AuNPs), potassium chloride, 2-aminothiophenol (2-ATP), phosphate-buffered saline (PBS) and ferri-ferrocyanide (K4[Fe(CN) 6 ], K3[Fe(CN) 6 ]), were all purchased from Sigma-Aldrich, Saint-Quenti-Fallavier, France. Ultra-pure water was used throughout the experiments.
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