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85 protocols using 3 3 diaminobenzidine (dab)

1

Immunohistochemical Localization of Steroidogenic Proteins

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Serial sections of musk gland were incubated with primary polyclonal antibody (200 μg/ml, 1:200 dilution) against AR (Abcam) for 12 h at 4 °C. Serial sections of testis were incubated with primary polyclonal antibody (200 μg/ml, 1:200 dilution) against StAR (Santa Cruz Biotechnology), P450scc (Abcam) or 3β-HSD (Abcam) for 12 h at 4 °C. The sections were then incubated with a second antibody, goat anti-rabbit IgG conjugated to biotin and to peroxidase with avidin, using a rabbit ExtrAvidin staining kit (ZSGB-BIO), followed by visualizing with 0.5 mg 3,3-diaminobenzidine (Solarbio) solution in 1 ml of 0.05 M Tris–HCl buffer, pH 7.6, plus 0.4 μl H2O2.
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2

Immunohistochemistry Protocol for Breast Cancer

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Immunohistochemistry was carried out as previously described [25 (link)] Paraffin-embedded sections (4 μm) from breast cancer were dewaxed and dehydrated, and antigen retrieval was performed by high pressure sections in Citrate Antigen Unmasking Solution (Beyotime, P0081) for 10 min. After blocked with the Normal Goat Serum (Solarbio), sections were incubated overnight at 4 °C using primary antibodies (shown in Supplementary Table 3). Following incubation with a biotinylated secondary antibody (anti-rabbit, 1:200; Vector Laboratories) for 30 min at 37 °C, antigens were revealed with 3,3’-diaminobenzidine (Solarbio).
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3

Quantitative Analysis of Tumor Angiogenesis

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After tumor removal, the fresh tumors were immediately embedded in optimum cutting temperature compound (Sakura, Zoeterwoude, Netherlands) and sectioned (5 mm), followed by staining with hematoxylin and eosin (H&E), CD31 antibody, and oil red O. Briefly, sections mounted on slides were dehydrated in ethanol, rinsed in PBS containing Tween 20 (PBST), and incubated with 0.3% hydrogen peroxide for 15 min. After washing with PBST, sections were blocked by incubation in 3% bovine serum albumin for 30 min, followed by overnight incubation with primary antibody (rabbit anti-CD31 diluted 1 : 50; Abcam). Slides were washed with PBST followed by a 1 h incubation with HRP-conjugated goat anti-rabbit secondary antibody (1 : 4000, Abcam), rinsed in PBST, and exposed to 3,3′-diaminobenzidine (Solarbio, Beijing, China). Then, counterstaining was performed with hematoxylin (Solarbio, Beijing, China). For H&E staining, sections were stained in hematoxylin for 3 min, washed in water, and then exposed for 5 min to eosin (Solarbio). The immunostaining results were analyzed using imaging software (Olympus, Tokyo, Japan).
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4

Immunohistochemical Analysis of APEX1 Expression

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All tissue samples were fixed in 10% neutral formalin, embedded in paraffin, sectioned, dewaxed with xylene and dehydrated with gradient ethanol. Then, citric acid buffer was used for high temperature antigen repair, 3% hydrogen peroxide (Solarbio, Beijing, China) was used to block endogenous peroxidase activity, and the samples were incubated at room temperature for 20 min. Next, the slides were incubated with an anti-APEX1 primary antibody (Abcam, Cambridge, UK) at 4°C overnight. The next day, the samples were incubated with an appropriate horseradish peroxidase-conjugated secondary antibody at 37°C for 30 min. After staining with 3, 3′-diaminobenzidine (Solarbio, Beijing, China), the samples were stained with hematoxylin, dehydrated with gradient ethanol, made transparent with xylene, and sealed with neutral gum. The integrated option density (IOD) of APEX1 was chosen to determine the semiquantitative protein expression. ImageJ software (version 1.2; WS Rasband, National Institute of Health, Bethesda, MD, USA) was used to conduct deconvolution and downstream analyses.
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5

Quantitative Analysis of NHE1 in Tissue Slices

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Tissue slices and NHE1 (Affinity Biosciences, OH, USA) were incubated overnight at 4°C. The assay was performed by using an IHC detection kit (pv-0023, Beijing Bioss) in accordance with the kit's instruction manual. Positive immunoreaction was visualized by using 3,3′-diaminobenzidine (Beijing Solarbio). Images were captured with a scanning microscope (3DHISTECH, Hungary). NHE1 staining was quantitatively analyzed by using Image-Pro Plus 6 analysis software.
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6

Immunohistochemical Analysis of PLEK2

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For immunohistochemistry analysis, all specimens were embedded in paraffin and cut into 5-µm-thick sections. Following antigen retrieval with citrate sodium and blocking in 5% bovine serum albumin at room temperature for 2 h, the sections were incubated with primary antibody for PLEK2 overnight at 4°C. The sections were incubated with the corresponding HRP-conjugated secondary antibody (Jackson ImmunoResearch Labortaories, Inc., 1:200, cat. no. 111-035-003) for 2 h at room temperature and visualized using 3,3′-diaminobenzidine (Beijing Solarbio Science & Technology Co., Ltd.) for 3 min. The sections were observed under a light microscope (magnification, ×200).
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Immunohistochemical Analysis of Glutamate Transporters

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After anesthesia, the rat was perfused through the heart with normal saline and 4% paraformaldehyde. The rat was decapitated and the brain was quickly removed and fixed in 4% paraformaldehyde for 48 hours. The tissue was then embedded in paraffin and sectioned into 5-μm-thick slices. The slices were dehydrated and incubated with rabbit anti-EAAT1 polyclonal antibody (1:500; GeneTex, Irvine, CA, USA; No. GTX37432) or rabbit anti-EAAT2 polyclonal antibody (1:500; GeneTex; No. GTX20262) at 4°C overnight, and then with goat anti-rabbit IgG (1:200; MultiSciences Biotech Co., Ltd., Hangzhou, China) at 37°C for 1 hour. After conjugating the primary antibody to the secondary antibody, the slices were visualized with 3,3′-diaminobenzidine (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China), counterstained with hematoxylin (Beijing Solarbio Science & Technology Co., Ltd.), and mounted. The slides were photographed with a light microscope (Olympus, Tokyo, Japan) and analyzed using Image Pro Plus software (version 6.0; Media Cybernetics, Inc., Rockville, MD, USA) (Chang and Wang, 2003; Feng and Ji, 2017).
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8

Immunohistochemical Analysis of Tumor Angiogenesis

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The tumour tissues were embedded in paraffin, sectioned, and were subjected to xylene dewaxing. Citric acid was used for antigen retrieval. A 3% H2O2-methanol solution was used to block endogenous peroxidase for 15 min, followed by blocking with 5% bovine serum albumin for 20 min. The primary anti-cluster of differentiation (CD)31 polyclonal antibody (1:50, ab28364, Abcam, UK) was added dropwise at 37 °C and incubated for 2 h. Goat anti-rabbit immunoglobulin G (IgG; Proteintech, USA) labelled with horseradish peroxidase was incubated at 37 °C for 30 min. 3, 3-diaminobenzidine (Solarbio, Beijing, China) was used to develop colour, and haematoxylin was used for counterstaining; the sections were then dehydrated, rendered transparent, and cover-slipped with Permount mounting medium (Thermo Fisher Scientific, Inc., USA). The sections were observed under a × 100 optical microscope (Olympus, Japan) to detect the positive protein expression in the tumour tissue.
Microvascular density (MVD) quantitative analysis was performed according to a method proposed previously (Weidner et al. 1992 ). In each section, the number of microvessels stained with CD31 was counted in five fields, and the average value was used as the MVD value of the tumour tissue.
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9

Immunohistochemical Analysis of COX-2 and iNOS

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For immunohistochemical staining analysis, the 5-μm slices were deparaffinized in xylene, hydrated with graded alcohol and then washed with 1% PBS. Subsequently, these slices were first incubated in 10 mmol/l citrate buffer (pH 6.0) at 100˚C for 10 min to retrieve the antigen and then placed in 3% hydrogen peroxide for 15 min at room temperature to block the endogenous peroxidase activity. Following rinsing with 1% PBS three times, the sections were blocked with goat serum for 30 min, incubated with rabbit polyclonal primary antibodies against the cyclooxygenase-2 (COX-2; 1:100 diluted; Wanlei Life Sciences, Shenyang, China) and inducible nitric oxide synthase (iNOS; 1:100 diluted; Wanlei Life Sciences) at 4˚C overnight. Subsequently, the sections were washed with 1% PBS, incubated with the corresponding goat anti-rabbit biotin-labeled secondary antibody (1:200; Beyotime, Shanghai, China) at 37˚C for 30 min and subsequently incubated in avidin-horseradish peroxidase complex (Beyotime). Thereafter, the sections were visualized using 3,3′-diaminobenzidine (Solarbio, Beijing, China) and counterstained with hematoxylin (Solarbio).
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10

Immunocytochemistry for α-SMA expression

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In aseptic conditions, dry glass slides were placed in a six-well plate, onto which the 2x106 cells were subsequently seeded and cultured overnight. The cells were then fixed using 4% paraformaldehyde for 30 min at room temperature followed by permeabilization with 0.2% Triton X-100 for another 5 min at room temperature. After blocking with 10% goat serum (Beijing Solarbio Science & Technology Co., Ltd.) in PBS for 1 h at room temperature, the cells were incubated with primary α-SMA antibody (1:200; cat. no. 55135-1-AP; Proteintech Group, Inc.) overnight at 4˚C. This was followed by incubating with HRP-conjugated secondary antibody (1:400; cat. no. AP307P; Merck KGaA) for 1 h at room temperature, and then 3,3'-diaminobenzidine (Beijing Solarbio Science & Technology Co., Ltd.) was incubated for another 5 min at room temperature subsequently. Finally, hematoxylin (Beijing Solarbio Science & Technology Co., Ltd.) was used to stain the nuclei and neutral for 2 min at room temperature and gum was used to seal the samples. Images of the cells were captured under light microscopy (magnification, x100) and the extent of immunostaining was analyzed using Image-Pro Plus software (6.0, Media Cybernetics, Inc.).
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