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Axio vert a1

Manufactured by Zeiss
Sourced in Germany, United States

The Axio Vert.A1 is a high-performance inverted microscope designed for a wide range of applications in life science research. It features a stable and vibration-free optical system, providing excellent image quality and resolution. The microscope is equipped with various illumination options and supports a variety of observation techniques, making it a versatile tool for researchers and scientists.

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472 protocols using axio vert a1

1

Evaluate Cancer Cell Migration Inhibition

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The treated 4T1 and MDA-MB-231 cells were seeded into a 6-well plate and incubated at 37°C overnight, after which the cells (85%–95% confluence) were carefully scraped out utilizing a 200 μL pipette tip. Each well was washed with PBS twice to smooth the edges of the scratches and remove the floating cells. Subsequently, the medium containing the tested drugs was added to the wells. The imaging of the plate was conducted at the same location using an inverted optical microscope (Zeiss Axio vert A1, Oberkochen, Germany). The gap was measured at 0 h (t1), and 24 h (t2), and the relative mobility (%) was derived based on the formula: (t1-t2)/t1×100%.
In terms of transwell migration assay, 6×104 MDA-MB-231 cells or 5×105 4T1 cells in 200 μL of serum-free or drug-containing medium were introduced into the upper chamber of a transwell insert, and 600 μL of the serum-containing medium was added into the lower chamber of transwell plates (3422, Corning, USA). After 24 h incubation, the cells were fixed with 600 μL methanol for 30 min. Subsequently, the cells were stained with 600 μL 0.1% crystal violet (LEAGENE, Beijing) for 30 min. The micrographs were imaged at 10× magnification under a microscope (Zeiss Axio vert A1, Oberkochen, Germany). The stained cells were quantified from three random fields.
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2

Multimodal Microscopy of Protein Liquid-Liquid Phase Separation

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Bright field, DIC, and fluorescence microscopy images were recorded at ×40 and ×60 (oil immersion) magnification using an epifluorescence microscope (Nikon Eclipse Ti2 (RAMCON, Denmark)) at the DTU bio-imaging core facility. The images were obtained with a 16-bit depth and with a resolution of 2048 × 2048. An excitation wavelength of 470 nm and emission channel of 500–600 nm was used for all three labeled proteins/peptides used in our study. The exposure time was adjusted accordingly for each sample and image to ensure the highest possible number of droplets are detected. The fusion and droplet re-mixing study for Ddx4n1 and α-Syn LLPS (Supplementary Movies 13) were obtained using an inverted bright field microscope (Zeiss Axio vert. A1, (Zeiss, Germany)) with the help of a ×40 objective. The ThT co-partitioning was monitored using an in-built ThT channel in the Zeiss Axio vert. A1 microscope. The images were taken in 16-bit depth and with a resolution of 1024 × 1024. All the microscopy images are analyzed subsequently using ImageJ (NIH, USA).
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3

Alizarin Red Staining for Calcification

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For calcification assessment, MC3T3-E1 cells were cultured (1×104 cells/well in 6-well plates) under the same culture conditions as detailed above for 14 days. Alizarin Red staining of matrix mineralization was performed. Cells were fixed in 4% paraformaldehyde for 10 min at room temperature and stained with 0.1% Alizarin Red (Sigma-Aldrich; Merck KGaA)/Tris-HCl (pH 8.3) for 30 min at 37°C, air-dried and photographed under a light microscope at ×100 magnification (4 images/well; ZEISS Axio VertA1, Zeiss AG, Oberkochen, Germany). The calcified nodules were quantized by integrated optical density using Image Pro Plus 6.0 software (Media Cybernetics, Inc., Rockville, MD, USA).
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4

Cigarette Smoke-Induced Cell Responses

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An unfiltered cigarette was combusted with the use of a peristaltic pump. Cigarette smoke was slowly bubbled into 5 ml complete BEBM from the start of the ignition to the end of the cigarette burnout, which took ~5 min. The resulting medium was adjusted to pH 7.4, sterile-filtered through a 0.22-µm Millex filter (EMD Millipore) and defined as 100% CSE. BEAS-2B cells were pre-treated with 20, 40 and 80 µM icariin (Shanghai Ronghe Corporation) and 10 µM DEXamethasone (DEX; Sigma-Aldrich, Merck KGaA), or vehicle control for 24 h prior to exposure to 5% CSE for 4 h at 37˚C, 5% CO2 (32 (link)). The vehicle used was DMSO (Sigma-Aldrich; Merck KGaA). The applied concentration of DMSO in both control and treated groups was 1.6 µl/ml, lower than the cytotoxic concentration (33 (link)). The morphological changes to BEAS-2B cells were visualised using a Zeiss AxioVert A1 fluorescence microscope (Carl Zeiss AG) at low power (x10 magnification).
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5

Cell Morphology and Cytoskeleton Visualization

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General cell morphology was visualized after fixation with 4% paraformaldehyde through staining with 4% Giemsa solution for 1 min, washing with distilled water and natural drying. For cytoskeleton β-actin immunocytochemistry, after fixation with 4% paraformaldehyde, cells were permeabilized with 100% methanol at −20 °C for 15 min, and 0.5% Triton X-100 (Amresco Inc., Solon, OH, USA) in PBS for 15 min. Non-specific binding was blocked with 1% goat serum (Sigma-Aldrich, St. Louis, MO, USA) for 30 min. After each incubation step, the samples were washed thrice under gentle agitation on a horizontal shaker table for 5 min. The primary antibodies anti β-actin (mouse monoclonal anti βACT antibody, working dilution of 1:1000, MA1-140, Thermo Fisher Scientific, Rockford, IL, USA) were incubated overnight under refrigeration and were followed by corresponding goat anti-mouse (IgG FITC, working dilution of 1:1000, Sigma Aldrich, St. Louis, MO, USA) for 1 h at room temperature. Hoechst’s solution (H3569, 2μL/mL for 5 min, Invitrogen, Eugene, OR, USA) was used for nuclear staining. Cultures were examined under a phase contrast microscope (Zeiss Axio Vert.A1, Zeiss, Jena, Thuringia Land, Germany), equipped with an AxioCam MRC camera (Zeiss, Jena, Thuringia Land, Germany).
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6

Immunofluorescent Staining of Tissue Sections

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Tissue sections were heated to room temperature and fixed in 4% formaldehyde solution with consequent 3 times washing by PBS. In the next step, the slides were blocked by 10% secondary antibody’s donor serum in PBS supplemented by 2% bovine serum albumin (BSA). Stainings by primary antibodies were performed at 4 °C overnight, using anti-CD68 (#137001, BioLegend, San Diego, CA, USA), anti-CD31 (#553370, BD Biosciences Pharmingen, Franklin Lakes, NJ, USA) or anti-NF200 (#4142, Sigma-Aldrich) anti-mouse antibodies at dilutions specified by the manufacturers. After incubation with primary antibodies and PBS washing, slides were stained by the respective secondary antibodies conjugated with AlexaFluor488 (#A21206, Thermo Scientific, Waltham, MA, USA) and AlexaFluor594 (#A21206, Thermo Scientific). Nuclei were counterstained by DAPI (Sigma-Aldrich) for 5 min and slides were washed by PBS and mounted in medium Aqua Polymount (Polysciences Inc., Warrington, PA, USA) under coverslips. Staining was visualized by fluorescent microscope Zeiss Axiovert A1 (Zeiss, Oberkochen, Germany) and images were analyzed in Axiovision 3.1 (Zeiss) and ImageJ (NIH, USA) software.
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7

Candida albicans Hyphal Transition Assay

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Before the induction of filamentation, C. albicans cells were preincubated overnight in YPG supplemented with sub-MIC concentration of FLC at 37 °C without shaking. To induce hyphal transition, the suspensions of C. albicans (OD = 0.4) were treated with 10% heat inactivated FBS in PBS for 2 h at 37 °C in 24-well flat-bottom microplates (NUNC) in volume 0.4 mL, in the presence of sub-MIC concentrations of FLC (1/16) and PB (range 1/8–1/32) and with shaking (130 rpm). The samples were observed under inverted microscope Zeiss Axio Vert. A1 with objective Zeiss LD A-Plan (40 × /0.55 Ph1). The images wer recorded using Industrial Digital Camera 5.1 MP 1 /2.5”. The assessment of cell morphology and the length (μm) of hyphae was performed using ImageJ software.
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8

Cell Viability Assay with Calcein-AM

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Cells were seeded onto 35 mm plates at a low density (0.1 × 106 cells/35 mm plate). After 1, 2, 3, 5, and 7 d incubation, cells were treated with Calcein-AM (Thermo Fisher Scientific, Waltham, MA). Calcein-AM (25 nM) and 1 μg/mL Hoechst were added to the culture medium for 30 min incubation at 37 °C in the dark. Micrographs were taken using a Zeiss Axiovert A1 (Zeiss, Oberkochen, Germany).
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9

Cell Migration Assay

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Immediately after FSS exposure, cells were seeded on plates (0.8 × 106 cells/35 mm plate) and grown in an incubator (5% CO2 at 37 °C). After 24 h incubation, a straight line was scratched onto the plate using a sterile 10 μl pipette tip. Scratches with a gap distance >450 μm or <400 μm were excluded. 24 h after plates were scratched, phase contrast micrographs were taken using a Zeiss Axiovert A1 (Zeiss, Oberkochen, Germany), and the gap distance was measured using AxioVision 4.9 (Zeiss).
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10

Combination Assay for Antiparasitic Activity

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The assay was performed using transparent 96-well flat-bottom plates. DMSO was used as a negative control at a final concentration of 0.5%. Metronidazole was plated at 50 μM as a positive control. Lonafarnib and metronidazole were combined at ratios of 4:1, 2:1, 1:1, 1:2, and 1:4. Parasites were plated and incubated for 48 h as described in the first pass and dose response assay for E. histolytica (Debnath et al., 2014 (link)). Images were captured after 24 and 48 h post-incubation using a Zeiss Axiovert A1 inverted microscope (10 ×, 20 ×, 40 × and 63 × objective) and a Zeiss AxioCam 503 mono digital camera controlled by the Zen 2 lite software (Version 2.0.0.0).
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