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Superblock blocking buffer

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom

SuperBlock blocking buffer is a ready-to-use solution designed to reduce non-specific binding in immunoassays and western blotting applications. It is a proprietary formulation that effectively blocks non-specific binding sites on membranes or solid supports, helping to improve signal-to-noise ratios and assay specificity.

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175 protocols using superblock blocking buffer

1

Immunolabeling of Bacillus Spores

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Ten milligrams of spores were resuspended in 750 μl SuperBlock Blocking buffer (Thermo Scientific) and incubated for at least 20 min at room temperature. The spores were then harvested by centrifugation and the spore pellet was resuspended in 250 μl SuperBlock Blocking buffer with 1 μl primary antibody and incubated at room temperature for 20 min (with mixing every 5 min). Rabbit polyclonal anti‐rBclA antibodies were used (Thompson et al., 2007 (link)). Following incubation with the primary antibody, the spores were harvested by centrifugation and washed with 750 μl of SuperBlock Blocking buffer. The pellet was then resuspended in 250 μl of SuperBlock Blocking buffer with secondary antibody conjugate (1:250 goat anti‐rabbit IgG‐Alexa Fluor 568; Invitrogen). The spores were incubated at room temperature for 20 min, pelleted, and washed with 750 μl SuperBlock Blocking buffer, followed by three washes with 750 μl PBS, and finally resuspended in 250 μl PBS. The spores were examined by epi‐fluorescence microscopy using a Nikon E600 epifluorescence microscope using the mCherry filter set.
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2

Immunostaining and Confocal Imaging of HAE

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Cells were prepared for immunostaining and confocal microscopy by fixation in 2% paraformaldehyde for 15 minutes, permeabilization in 0.2% Triton X-100 for 1 hour, and blocking in SuperBlock Blocking Buffer (Thermo Fisher Scientific, Waltham, MA). Cleaved caspase-3 was immunostained by incubating HAE with a primary human cleaved caspase-3 (Asp175) antibody (catalog no. MAB835; R&D Systems, Minneapolis, MN, 1:100 in SuperBlock Blocking Buffer) for 1 hour. This was followed up with a 1-hour incubation of an Alexa 568 labeled anti-rabbit secondary antibody (catalog no. A-11036; Invitrogen, Waltham, MA, 1:1000 in SuperBlock Blocking Buffer). To stain for F-actin, HAE were incubated with Phalloidin-Alexa 647 (1:50 in PBS, catalog no. A22287; Thermo Fisher Scientific) for 30 minutes. The filters with the HAE were then cut from the rest of the transwell insert and mounted on glass microscope slides using VECTASHIELD Mounting Medium with DAPI (catalog no. H-1200-10; Vector Laboratories, Inc., Burlingame, CA). Confocal images were acquired using a Leica TCS SP3 confocal microscope (Leica Microsystems, Inc.) with 20x, 40x, and 63x objectives. Images were processed and z-stacks were compiled using ImageJ version 2.1.0. Live-image microscopy was performed using a Leica DMI6000-B inverted microscope (Leica Microsystems, Inc., Buffalo Grove, IL) using a 10x objective.
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3

ELISA-based Comparison of mAb Binding

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An ELISA method was used to compare binding efficiency of mAbs according to a published method [47] (link). LPS from E. coli 055:B5 (Sigma) and Leptospira licerasiae[48] (link) were used as specificity controls. B. melitensis LPS was dissolved (2 µg/ml) in 0.06 M sodium carbonate buffer (pH 9.6); 100 µl was used to coat wells by incubation overnight at 4°C. For the assay, Superblock blocking buffer (Thermo Fisher Scientific, IL, and USA) was used for blocking, TBST was used for washing the plate and 1% Superblock blocking buffer in TBST was used to dilute antibodies and conjugates. LPS-coated plates were blocked (for 1 hr at 22°C followed by three washes. mAbs were diluted (2 µg–0.02/ml) and added 200 µl per well in duplicate and incubated overnight at 4°C. The wells were washed three times with TBST and 200 µl of diluted (1∶5,000) goat anti-mouse immunoglobulin G (IgG) antibody conjugated to horseradish peroxidase was added to each well and incubated for 1 hr at room temperature. The plate was washed four times and 100 µl of chromogenic substrate (TMB Microwell Peroxidase Substrate system, KPL, Gaithersburg, MD) was added to each well and the reaction was stopped by the addition of 100 µl of 2N H2SO4. The plate was read using a microplate reader (Spectramax Plus, Molecular Devices, Sunnyvale, CA) at wavelength 450 nm.
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4

Immunostaining of Micropellet and High-Density Cell Cultures

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Cells in micropellet cultures were fixed with 4% paraformaldehyde, washed in PBS and then sectioned and frozen (LEICA CM 1950). The 10‐μm‐thick sections were rinsed twice in PBS, followed by soaking in SuperBlock blocking buffer (Thermo) for 1 hour at room temperature, and then incubated with primary antibody overnight at 4°C. The sections were then rinsed twice with PBS and stained with secondary antibody conjugated with Alexa 594 (Thermo). Images were taken using an Olympus epifluorescence microscope. For high‐density cultures, cells were rinsed twice with PBS and then fixed with 4% paraformaldehyde, soaked in SuperBlock blocking buffer (Thermo) for 1 hour at room temperature and then incubated with primary antibodies overnight at 4°C. The sections were then rinsed twice with PBS and stained with secondary antibody conjugated Alexa 594 (Thermo). Images were taken using an Olympus epifluorescence microscope or confocal microscope (Olympus FV‐1000).
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5

Multicolor Labeling of Infected Cells

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After fixation, cell culture was permeabilized for 10 minutes in 0.5% TritonX-100 in 1× PBS at RT followed by blocking with SuperBlock Blocking Buffer (37515, Fisher Scientific) in PBS for 10 minutes at RT. Samples were then incubated in staining buffer with CellMask green (C37608, Invitrogen, for E. coli-infected U2OS), and BODIPY FL DHPE (D3800, Fisher Scientific, for S. aureus and C. albicans-infected U2OS) and DAPI (62248, Fisher Scientific, for C. albicans-infected U2OS) together with 3 hours at RT. Samples were then washed at least 3 times with washing buffer for at least 10 minutes each at RT.
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6

Immunocytochemical Analysis of Retinal Ganglion Cells

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Dissociated retinal cells were cultured on the chamber slides for 6 days in medium+GFs and fixed in 4% paraformaldehyde (PFA) for 30 min at room temperature. After fixation, the cells were blocked with SuperBlock Blocking Buffer (Fisher Scientific, Chicago, IL, USA) at room temperature for 1 h. Primary antibodies (Supplementary Table S1) were diluted in SuperBlock and incubated overnight at 4 °C. Wells were washed and incubated with AlexaFluor/TRITC secondary antibody (Supplementary Table S1) for 1 h at room temperature. Slides were then rinsed again and mounted with ProLong Gold anti-fade reagent with DAPI (4′,6-diamidino-2-phenylindole, dihydrochloride; Molecular Probes, Grand Island, NY, USA). Images were captured at × 400 magnification using a Nikon Eclipse Ti-U Microscope (Nikon, Melville, NY, USA) with the Nuance Multispectral imaging system (PerknElmer, Inc. Hopkinton, MA, USA) and analyzed using Adobe Photoshop CS5 (Adobe Systems Incorporated, San Jose, CA, USA) software. Images were acquired from random fields of view for every well, and the procedure was repeated in independent culture experiments (eight images/well, n=8). Mean number of Brn3a- and Rbpms-positive RGCs were counted and quantified over total number of DAPI cells per image and data are presented as mean±S.E.M.
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7

Proximity Ligation Assay for NTS1R-D2R Interaction

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48 h after transfection, in situ PLA was performed as previously described35 (link) using untransfected HT22 cells as controls. Subsequent to permeabilization and blocking, 4% PFA fixed cells were treated with rabbit polyclonal NTS1R antibody (1:500) (Abcam, Cambridge, UK) and mouse D2R antibody (1:600) (Merck, Darmstadt, Germany) in SuperBlock Blocking Buffer (Fisher Scientific, Schwerte, Germany) overnight at 4 °C. Thereafter, the proximity probe mixture consisting of 1:5 dilutions of Duolink In Situ PLA-Probe Anti-Rabbit PLUS and Anti-Mouse MINUS (Sigma Aldrich) in blocking buffer, respectively, was added (60 min, 37 °C) followed by ligation (ligase, 0.025 U/µL, 30 min, 37 °C) and rolling circle amplification (polymerase, 0.125 U/µL, 100 min, 37 °C, Duolink In Situ Detection Reagents Red, Sigma Aldrich). Nuclei were stained with Duolink Mounting Medium with DAPI (Sigma Aldrich). After drying, the coverslips were sealed with nail polish and stored at −20 °C. PLA signals were visualized using a Leica TCS-SL confocal microscope (Leica, Buffalo Grove, USA) equipped with a TexasRed filter (fluorophore emission at 624 nm) and quantified with Duolink Image Tool software (Olink, Uppsala, Sweden).
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8

Multicolor Staining of Infected U2OS Cells

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After fixation, cell culture was permeabilized for 10 min in 0.5% TritonX‐100 in 1× PBS at RT followed by blocking with SuperBlock Blocking Buffer (37 515, Fisher Scientific) in PBS for 10 min at RT. Samples were then incubated in staining buffer with CellMask green (C37608, Invitrogen, for E. coli‐infected U2OS), and BODIPY™ FL DHPE (D3800, Fisher Scientific, for S. aureus and C. albicans‐infected U2OS) and DAPI (62 248, Fisher Scientific, for C. albicans‐infected U2OS) together with 3 h at RT. Samples were then washed at least three times with washing buffer for at least 10 min each at RT.
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9

Serum Antibody Screening for Cysticercosis

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Cryopreserved serum collected during the clinical study was retrospectively screened for OV16 IgG4 antibodies by enzyme-linked immunosorbent assay (ELISA) with Horseradish peroxidase (HRP) as described earlier [17 (link)]. Briefly, plates were coated with OV16 antigen (Abcam, Cambridge, UK) overnight and washed three times with washing buffer (Phosphate buffered saline with 0.5% Tween 20). Plates were blocked with SuperBlock Blocking buffer (Invitrogen, Carlsbad, CA, USA) for 30 min and washed three times. Samples were diluted 1:200 and incubated at room temperature for 1 h, followed by five washing steps. HRP-conjugated anti-human IgG antibodies (Abcam) were used as detection antibody, diluted 1:10,000 and incubated for 1 h. After five washing steps, one-step Ultra TMB substrate solution (ThermoFisher Scientific, Waltham, MA, USA) was added, and the reaction was stopped by adding 1N HCl after 10 min. The absorbance was measured at an optical density of 450 nm. T. solium antigens were also measured on collected sera by an in-house B158/B60 antigen ELISA as described before [18 (link)]. This test has a sensitivity of 90% to 100% to detect current cysticercosis and a specificity of 83% to 98% [19 (link)].
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10

Ultrastructural Immunogold Localization

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After fixation and dehydration, the samples were incubated with propylene oxide prior to exposure to propylene oxide/Epikote [13 (link),14 (link)]. The blocks were embedded with Epon-Araldite mixture (Electron Microscopy Sciences, Hatfield, PA, USA) and sectioned. The sliced samples were then examined under a transmission electron microscope (HITACHI-7000, Hitachi, Japan). For immunogold labeling, the sections of the cells on nickel grids were treated with 10% H2O2 for 10 min and then blocked with SuperBlockTM blocking buffer (Thermo Fisher Scientific Inc.) for 30 min followed by mouse monoclonal anti-FTH1 (Santa Cruz Biotechnology, Inc., Dallas, TX, USA) and rabbit polyclonal anti-NCOA4 (Abcam) antibody treatment overnight. The grids were hybridized with goat polyclonal anti-mouse (20 nm) and goat polyclonal anti-rabbit (12 nm) secondary antibodies containing gold particles (Abcam) for 1 h. The sections were then stained with saturated uranyl acetate and lead citrate. The images were examined under a transmission electron microscope.
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