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Microm hm 650v vibratome

Manufactured by Thermo Fisher Scientific
Sourced in Germany, United States

The Microm HM 650V vibratome is a precision instrument designed for cutting thin sections of biological samples. It utilizes a vibrating blade to produce high-quality tissue sections for microscopy and other analytical applications.

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7 protocols using microm hm 650v vibratome

1

Visualizing Fungal Invasion in Fruit Tissue

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Fresh fruit sections (100 µm) obtained with a Microm HM650 V vibratome (Thermo Scientific, Walldorf, Germany) were dipped in a methyl blue (CI 42780) solution for 3 min to stain the fungi. Slides were observed with a Nikon Eclipse Ni-E (Tokyo, Japan) wide-field microscope (filter cube UV-2A, exc: 330-380, em: 420-800) with a PLAN APO 2x 0.1 NA objective and a Nikon CMOS DS-Ri2 camera, and images were processed with ImageJ v1.51n software.
X-Ray µ-Tomography:
A whole young fruit of the “Queen” cultivar was observed using a SkyScan 1076 microtomograph (Microphotonics, Belgium). The 3D reconstruction was performed with NRecon (Microphotonics, Belgium) and Avizo (FEI Visualization Sciences Group) software.
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2

Immunohistochemical Analysis of Zebrafish Brain

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Immunohistochemistry was performed as described (van Ham et al., 2014; van Ham, Kokel, and Peterson, 2012). Briefly, fish were euthanized in ice water, followed by fixation of the brain inside the skull in 4% PFA at 4°C. Subsequently, the brains were carefully removed from the skulls and dehydrated with a 25%, 50%, 75%, 100% MeOH series and stored at −20°C for at least 12 h. After rehydration, brains were embedded in 4% w/v low melting point agarose in PBS and cut into 80 µm sections using a Microm HM 650V vibratome (Thermo Scientific, Waltham, USA). Immunostainings on free‐floating sections were performed as described (Adolf et al., 2006). Primary antibodies: PCNA (1:250, Dako, Glostrup, Denmark), l‐plastin (1:1,000). Secondary antibodies: DyLight Alexa 488 (1:500), DyLight Alexa 647 (1:500). For nuclear staining Hoechst was used. Sections were mounted in Vectashield mounting medium H1000 (Vector Laboratories, Burlingame, USA).
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3

Invertebrate Central Nervous System Fixation

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Living specimens were cold-anesthetized for several minutes and prefixed for 10 min at room temperature in 4% paraformaldehyde (PFA) (Sigma Aldrich, #P6148, St. Louis, MO) in sodium hydrogen phosphate buffer (PBS, 0.1 M, pH 7.4; chemicals obtained from Carl Roth, Karlsruhe, Germany). Subsequently, specimens were decapitated and the VNC was dissected with fine forceps and fixed in 4% PFA dissolved in PBS over night at 4 °C.
Four specimens of each species were treated as whole mounts, two additional specimens of each species were further processed for vibratome sectioning. For the latter, preparations were washed in PBS, overlaid with Poly-L-Lysin (Sigma Aldrich, #P8920) for several minutes and embedded in 4% agarose (Sigma Aldrich, #A9414) dissolved in PBS at approximately 40 °C. After cooling to room temperature, the trimmed agarose-blocks were sectioned horizontally (80 μm) using a Microm HM 650 V vibratome (Thermo Scientific, Eugene, OR).
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4

Acute Cortical Slice Preparation

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Approval (# 338/2016A) of the ethics committee of the University of Tübingen as well as written informed consent was obtained from all patients, allowing spare tissue from resective surgery to be included in the study. Tissue preparation was performed according to published protocols (Verhoog et al., 2013 (link)). Cortex was carefully microdissected and resected with only minimal use of bipolar forceps to ensure tissue integrity, directly transferred into ice-cold artificial cerebrospinal fluid (aCSF) (in mM: 110 choline chloride, 26 NaHCO3, 10 D-glucose, 11.6 Na-ascorbate, 7 MgCl2, 3.1 Na-pyruvate, 2.5 KCl, 1.25 NaH2PO4, und 0.5 CaCl2) equilibrated with carbogen (95% O2, 5% CO2) and immediately transported to the laboratory. Tissue was kept submerged in cool and carbogenated aCSF at all times. After removal of the pia, tissue chunks were trimmed perpendicular to the cortical surface and 250–350 µm thick acute slices were prepared using a Microm HM 650V vibratome (Thermo Fisher Scientific Inc) (Figure 1—figure supplement 2A). Afterwards the slices were kept in aCSF equilibrated with carbogen for 0.5 hr at room temperature before they were transferred either to patch setups for acute electrophysiological recordings and biocytin fillings or onto culture membranes for cultivation.
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5

Electrophysiological Characterization of Olfactory Bulb Neurons

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20 days after virus injection into the RMS (20 dpi), 250 µm thick sagittal OB slices were cut on Microm HM 650 V vibratome (Thermo Fisher Scientific, Dreieich, Germany). After an incubation period of up to 1 h, slices were transferred into the experimental setup and perfused with the extracellular solution containing (in mM): 125 NaCl, 3.5 KCl, 26 NaHCO3, 1.25 NaH2PO4, 2 CaCl2, 1 MgCl2, and 20 glucose, pH 7.4 when bubbled with 95% O2 and 5% CO2. Experiments were carried out at ~ 33 °C. Twitch-2B-positive control or Kv1.2/Kir2.1 overexpressing abJGCs were recorded in whole-cell configuration using an EPC-10 patch-clamp amplifier (HEKA, Lambrecht, Germany). The intracellular pipette solution contained (in mM): K-Gluconate 140, NaCl 10, HEPES 10, EGTA 0.2, Mg-ATP 4, Na-GTP 0.4, Alexa Fluor 594 0.05, pH = 7.3. Current and voltage traces were acquired at a 20 kHz sampling rate. For current-clamp recordings, currents of different polarity and amplitude (usually from − 40 pA to + 100 pA, 100 or 200 ms long) were injected stepwise to assess the cell’s firing ability. The holding current was adjusted to maintain basal membrane potential at − 70 mV.
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6

Prelimbic Cortex Slicing in Mice

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All procedures involving animals were conducted in compliance with Dutch regulations and were approved by the animal experimental committee (“Dier ethische commissie (DEC)”; license number: INF 13-02) of the Vrije Universiteit. Animals were housed and bred according to institutional and Dutch governmental guidelines and regulations.
C57BL/6 males aged 6–8 days (1 week), 13–16 days (2 weeks) or 26–30 days (4 weeks) were rapidly decapitated and their brains dissected out in ice cold cutting solution containing (in mM): 110 choline chloride, 26 NaHCO3, 10 D-glucose, 11.6 sodium ascorbate, 7 MgCl2, 3.1 sodium pyruvate, 2.5 KCl, 1.25 NaH2PO4, and 0.5 CaCl2 (Bureau et al., 2006). 300 µm thick coronal slices containing the prelimbic cortex were obtained using a Microm HM 650 V vibratome (Thermo Scientific, Waltham, MA, USA), and allowed to recover at room temperature in aCSF containing (in mM): 125 NaCl, 26 NaHCO3, 10 D-glucose, 3 KCl, 2.5 MgSO4, 1.6 CaCl2, and 1.25 NaH2PO4, with an osmolality of ±300 mOSm, which was continuously bubbled with carbogen gas (95% O2, 5% CO2).
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7

Acute Brain Slice Preparation

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All experimental procedures were approved by and carried out in accordance with University de La Laguna (ULL) Ethics Committee, Spanish (RD 53/2013) and European Commission (2010/63/EU) animal care guidelines. C57BL/6J mice (The Jackson Laboratory no. 000664) were housed in standard laboratory cages with ad libitum access to water and food in temperature- and humidity-controlled rooms under a 12:12 h light–dark cycle at the ULL animal facilities (registry no. ES380230024514). C57BL/6J adult male mice (postnatal 28 36) were slightly anesthetized with isoflurane, decapitated, and the brain quickly removed and immersed in an ice-cold high-sucrose solution (in mM: 189 sucrose, 10 glucose, 26 NaHCO3, 3 KCl, 5 MgSO4, 0.1 CaCl2, and 1.25 NaH2PO4) continuously bubbled with carbogen (95% oxygen/5% carbon dioxide). Coronal brain slices (350 µm) were obtained using a Microm HM650V vibratome (Thermo Scientific). Slices were maintained for 1 to 1.5 h in ACSF (in mM: 124 NaCl, 2.69 KCl, 1.25 KH2PO4, 2 MgSO4, 26 NaHCO3, 10 glucose, 2 CaCl2, and 0.4 ascorbic acid; pH 7.35) bubbled with carbogen at room temperature (22 to 24 °C).
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