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Anti e cadherin

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Anti-E-cadherin is a laboratory reagent used for the detection and quantification of the E-cadherin protein. E-cadherin is a cell-cell adhesion molecule that plays a crucial role in maintaining the integrity of epithelial tissues. This antibody can be utilized in various immunoassay techniques, such as Western blotting, immunohistochemistry, and flow cytometry, to study the expression and localization of E-cadherin in biological samples.

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46 protocols using anti e cadherin

1

Gut Barrier Integrity Evaluation

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Primary antibodies were obtained from the following: anti-MADCAM-1 and anti-Zonulen Occludens-1 (ThemoFisher, Rockford, IL, USA), anti-HSC70 (Santa Cruz, Dallas, TX, USA), anti-CD31 (Bioss, Woburn, MA, USA), anti-E-Cadherin (Life Technologies Corp, Carlsbad, CA, USA), and anti-ICAM1 (Cell Signaling, Trask Lane Danvers, MA, USA). Antibodies for flow cytometry were purchased from the following: anti-CD8a-BUV615 (BD Biosciences, Franklin Lakes, NJ, USA), anti-CD11c-BV650, anti-CD103-BV785, and anti-INF-gamma-BUV737 (BioLegend, San Diego, CA, USA), anti-Lymphocyte Peyer’s patch adhesion molecule-1 (LPAM1-BV421 or integrin α4β7; BD Biosciences, Franklin Lakes, NJ, USA), and secondary antibodies Alexa Fluor 488 and 568 IgG (Invitrogen, Eugene, OR, USA). Clindamycin was purchased from Fresenius Kabi (Lake Zurich, IL, USA), and tributyrin, sodium butyrate, and lipopolysaccharide were obtained from Sigma-Aldrich (St. Louis, MO, USA). Primers used for quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR) were synthesized by Integrated DNA Technologies (Coralville, IA, USA).
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2

Ecad/Vim Profiling and Cell Sorting

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For Ecad/Vim profiling, cells were fixed with 4% paraformaldehyde, permeabilized with 0.2% Triton X-100, and stained with the following primary and secondary antibodies and reagents: anti-E-cadherin (Life Technologies, 1:500), anti-vimentin (Cell Signaling Technologies, 1:500), allophycocyanin (APC)-labeled anti-mouse IgG (Santa Cruz), Cy3-labeled anti-rabbit IgG (Jackson Immuno). For CD44 staining, live cells were stained with phycoerythrin (PE)-conjugated anti-CD44 antibody (Biolegend). Live-cell sorting for GFP+ cells was performed on a BD FACSAria equipped with FACS DiVa6.0 software operating at low pressure (20 psi) using a 100-μm nozzle. Cell clusters and doublets were electronically gated out. Cells were routinely double sorted and post-sort analysis typically indicated purities of >90% with minimal cell death (<10%).
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3

Immunoblotting Analysis of Cellular Proteins

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Cell lysis and immunoblotting was performed as previously described [14 (link)]. Briefly, cells were lysed in PBS supplemented with 0.25% triton X and cOmplete, Mini Protease Inhibitor Cocktail (Roche). Lysates were then sonicated, and then centrifuged at 500×g to remove debris. An aliquot of sample containing total cellular protein was frozen at −80°C. Total cellular proteins, soluble, and membrane proteins were loaded on SDS–PAGE gels (Invitrogen) and processed for immunoblotting using the following antibodies: anti-E-Cadherin (Life Technologies, 13-5700), anti-hemagglutinin, anti-ubiquitin (LifeSensors, VU101), anti-K48-linked ubiquitin (Cell Signaling, 8081S), anti-K63-linked ubiquitin (Cell Signaling, 5621S), anti-CD172a (Millipore, 566310), anti-IFNGR1(Santa Cruz, sc-28363), anti-GSK3β (Cell Signaling, D613M), anti-V5 (Cell Signaling, 13202S), anti-GAPDH (Sigma), anti-STAT-1 (Cell Signaling, 9172P), anti-pSTAT-1 (Cell Signaling, 7649P), anti-EGFR (Cell Signaling, 4267S), and anti-β-actin mouse monoclonal antibody (Sigma). Immunoblots were exposed to Supersignal West Femto chemiluminescent substrate (Thermo Scientific).
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4

Immunoblotting of Cell Cycle Regulators

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Western blot assays were performed as previously described [24 (link)]. Antibodies used in the assays include: anti-HA, anti-phospho-p53 (Ser-15), anti-p53, anti-phospho-CHK2 (Thr-68), anti-phospho-CDK2 (Thr-160), anti-phospho-Rb (Ser-807/811), anti-Rb, anti-phospho-CDC2 (Tyr-15), anti-Smad2, anti-phospho-Smad2 (Ser465/467) (Cell Signaling Technology Inc.); anti-p21WAF1 (Calbiochem Inc., Billerica, MA, USA); anti-CDK2, anti-CDC2 (Santa Cruz Biotechnology Inc.); anti-CDC6, anti-α-tubulin, anti-Vimentin, anti-E-cadherin (Life Technologies Inc.).
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5

Immunofluorescent Staining of Trophoblast Cells

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Trophoblast cells were washed with phosphate-buffered saline (PBS) and then permeabilized with methanol (7 min, –80°C). The cells were then incubated overnight with ERAP2 (R&D Systems; #AF3830) antibody or anti-HLA-C (AbCam; #ab126722) and anti-E-Cadherin (Life Technologies; #131700) for detection. Cells were washed and incubated with Alexa Fluor 594 (Jackson ImmunoResearch; #715–585-150) and Alexa Fluor 488 (Jackson ImmunoResearch; #705–545-147) conjugated secondary antibodies. Nuclear stain DAPI was used as counterstain. The PFC region of sections was imaged using a Zeiss LSM 700 confocal laser-scanning microscope with the Ziess Axioimager. M2 microscope stand and a 20x/0.8 Plan-ApoChromat objective. Images were recorded using ZEN 2 (black edition) Carl Zeiss Microscopy GmbH, 2011 64-bit software.
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6

Quantifying NDRG1 Expression in Trophoblasts

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PHTs were cultured in standard conditions in the presence of PJ- or glucose-containing DMEM for 24 h and then fixed with methanol for 20 min at −20°C. After blocking for 1 h at room temperature with PBS with 5% bovine serum albumin (Sigma), fixed cells were incubated with either no primary antibody or a mixture of anti-NDRG1 (1:200; Catalog # 426200, Life Technologies) and anti-E-cadherin (1:200; Catalog # 18-0223, Life Technologies) antibodies overnight at 4°C. Cells were washed three times with PBS and incubated with a 1:500 dilution of DRAQ5 (Biostatus Unlimited, Leicestershire, UK) to stain DNA, and with appropriate secondary antibodies, as described [25 (link)]. One-micron-thick optical-section images were acquired by confocal microscopy using 600X total magnification and identical acquisition settings for all samples, as described [25 (link)]. The percent of cells expressing detectable NDRG1 was scored in five random fields, containing over 50 nuclei each, using trophoblasts from three different placentas, with the observer blinded to the treatment condition.
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7

Optimized Immunofluorescence Staining Protocol

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Paraffin-embedded specimens underwent hematoxylin and eosin (H&E) staining for histologic examination. To confirm a perceived increased density of goblet cells, we also performed period acid-Schiff (PAS) Alcian blue stains on selected samples. Immunofluorescence of OCT-embedded human tissue were challenging due to a rapid degradation and loss of immunofluorescence staining. To address this, tissues were embedded immediately in OCT compound and snap-frozen in liquid nitrogen. A modification of previous techniques allowed for an improvement in the detection of the immunofluorescence signal. Cryosections (8–10µm) were fixed, soaked in 2% formalin for 15 min, and washed three times with 1× Phosphate Buffered Saline (PBS) for 10 min. The samples were then incubated in blocking buffer (10% goat serum) for 1 h at room temperature, and incubated with primary antibodies diluted in 2% goat serum (mouse monoclonal anti-ZO-1 1:100, anti-occludin 0.6:100, anti-claudin-4 at 0.5:100 and anti-E-cadherin at 0.3:100 (Life Technologies, Invitrogen™, Carlsbad, CA) at 4°C overnight. After 3 additional 10 min washes in PBS, slides were incubated with corresponding secondary antibodies for 1 h and mounted with ProLong® Gold antifade reagent with 4’6-diamidino-2-phenylindole (DAPI) (Life Technologies). Slides were visualized using a Nikon A-1 Confocal fluorescence microscope.
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8

Visualizing Trophoblast-Endothelial Junctions

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In order to assess the formation of intercellular junctions, the trophoblast cells and HPVECs were fixed in 4% paraformaldehyde (PFA) for 15 minutes, permeabilized in 0.25% Triton X-100 for 10 minutes, and then incubated in 2% bovine serum albumin (BSA) for 1 hour. All steps were performed at room temperature. The trophoblast cells and HPVECs were incubated with anti-E-cadherin (Life Technologies) and anti-VE-cadherin antibodies (Cell Signaling Technologies), respectively. These primary antibodies were diluted in 2% BSA and incubated in the microdevice for 1 hour at room temperature. Next, the samples were thoroughly washed with PBS. Secondary antibodies (Life Technologies) were diluted in 2% BSA, incubated for 45 minutes at room temperature, and then washed with PBS. Nuclei were labeled using DAPI subsequent to the secondary antibody incubation. Following staining, the membrane was carefully removed from the microdevice and mounted onto a coverslip. Images were acquired using an inverted microscope (Zeiss Axio Observer) and a confocal laser-scanning microscope (Leica TCS SP8). Image processing and three-dimensional rendering were carried out using Volocity (PerkinElmer).
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9

Immunostaining of Stem and Epithelial Markers

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The following primary antibodies were used: anti-K14 (polyclonal
rabbit, 1:1000, Thermo Fisher Scientific), anti-GFP (chicken, 1:1000,
Abcam), anti-SOX2 (rabbit, 1:100, Abcam), anti-Vimentin (Rabbit, 1:200,
Abcam), Anti-ECadherin (rat, clone DECMA-1, 1:1000, eBioscience), anti-p63
(polyclonal rabbit, 1:200, Santa Cruz), Anti-Zeb1 (polyclonal rabbit, 1:300,
Bethyl), Anti-Zeb2 (polyclonal rabbit, 1:200, Sigma), anti-EpCam (rabbit
polyclonal, 1:200, Abcam). The following secondary antibodies were used:
anti-rabbit, anti-rat, anti-chicken, conjugated to AlexaFluor488 (1:400,
Molecular Probes), to rhodamine Red-X or to Cy5 (1:400, Jackson
ImmunoResearch).
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10

Immunofluorescence Analysis of HSF1 and E-cadherin in Caco-2 Cells

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Caco-2 cells were pretreated with 60 µM ALA for 24 h and exposed to HS for 24 h. Cellular localization of HSF1 and E-cadherin was assessed by an immunofluorescence staining as described previously [16 (link)]. Briefly, after HS exposure, cells were fixed with 10% formalin, washed with PBS, and permeabilized with PBS containing 0.1% Triton-X-100. After blocking in 5% serum, cells were incubated with anti-HSF1 (1:100, Cell Signaling, Danvers, MA, USA) and anti-E-cadherin (1:50, eBioscience) antibodies for 2 h at room temperature followed by incubation with Alexa Fluor conjugated secondary antibodies (Invitrogen). After a nuclear counterstaining with Hoechst 33,342 (1:2000; Invitrogen), the inserts were mounted with FluorSave Reagent (Calbiochem) and immune-localization of HSF1 and E-cadherin was determined with a Nikon Eclipse TE2000-U microscope equipped with a Nikon Digital Sight DS-U1 camera using an 40× objective. HSF1-immunostained slides were also examined by a Leica TCS SPE-II confocal laser scanning microscope on a DMI4000 (Leica Microsystems, Wetzlar, Germany); images were acquired with an oilimmersion objective (63×) and assembled using ImageJ 1.47 software.
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