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31 protocols using c8470

1

SNHG15 Knockdown Inhibits Cell Migration

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MDA-MB-231 cells were transfected with SNHG15 siRNA and the negative control siRNA. After 24 hours of transfection, the cells were harvested and counted. The cells were resuspended in serum-free culture medium and [4–5]×104 cells were plated onto the upper chamber of the transwell (8-mm chamber inserts; Corning, 3422) in 24-well plates. Meanwhile, 800 µL DMEM supplemented with 10% FBS was placed into the lower chambers of the 24-well plates. After 24 hours, the inserted chambers were fixed with methanol for 20 minutes and stained with 0.1% crystal violet (solarbio, C8470) for 30 minutes. Cotton swabs were used to remove the cells on the upper surface of the membrane, and the migrated cells on the bottom surface of the membrane were photographed under an inverted microscope.
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2

Colony Formation Assay in Breast Cancer Cells

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Following the intervention as needed, MCF-7 and MDA-MB-231 cells (1 × 103 cells/well) were seeded in six-well plates at 37°C and 5% CO2 for 14 days, and the colonies formed were fixed with 4% paraformaldehyde (P1110; Solarbio Lifesciences, China) for 15 min and stained with crystal violet (C8470; Solarbio Lifesciences, China) for 30 min. All colonies formed were then observed and photographed using a digital camera (OM-D E-M5 Mark III; Olympus, Tokyo, Japan). The colony formation rates of cells in each group were calculated by the software SigmaPlot 12.0 (Systat Software, Inc., San Jose, CA, USA).
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3

Cell Migration Assay Using Transwell Chambers

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Twenty-four-well Transwell chambers (140640; Millipore, Billerica, MA, United States) were used for a cell migration assay in accordance with the manufacturer’s protocol. Briefly, 1 × 105 cells in serum-free DMEM/F12 were added to the upper chamber of the insert, and 500 μL of DMEM/F12 containing 10% FBS was added to the lower chamber for culture. The cells were cultured in a humidified atmosphere for 24 h at 37°C under 5% CO2. The cells were then fixed with 4% paraformaldehyde for 15 min(s) and stained using 0.5% crystal violet (C8470; Solarbio, Beijing, China) for 20 min(s). The cells in the upper chamber were removed using a cotton swab, and the cells in the lower chamber in 3–4 random fields were counted under an inverted microscope (Leica Microsystems, Germany).
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4

Transwell Assay for Pancreatic Cancer Cell Migration and Invasion

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A transwell assay was performed in a Modified Boyden Chamber (Transwell, Costar, 3422, Cambridge, MA) to evaluate cell migration and invasion. Pancreatic cancer cells (SW1990 and ASPC1) in the logarithmic growth phase were trypsinized and inoculated into a six-well plate at a density of 300,000 cells/well. The cells were cultured for 24 h, followed by a transwell assay after 48 h of transfection. Prior to cell inoculation, the 24-well plates and transwell chambers were soaked for 5 min with phosphate-buffered saline. For the invasion assay, the chambers were additionally coated with 80 µl of Matrigel for 30 min in an incubator at 37 °C. Finally, the cells were starved for 24 h in serum-free medium, and 0.3 ml of cell suspension (200,000 cells/ml) was seeded in each upper transwell chamber; each lower chamber was filled with 0.7 ml of 10% FBS-DMEM. After 72 h of incubation at room temperature, cells that had migrated and invaded the lower chamber were fixed for 10 min with 1 ml of 4% formaldehyde (SF877501, Shanghai Sinopharm, China) and stained with 0.5% crystal violet (C8470, Solarbio) for 30 min. After removing the non-migrating and non-invading cells, the migrated and invaded cells were counted in at least three random fields under a microscope at 200 × magnification.
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5

Matrigel-based Transwell Invasion Assay

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Cell invasion in vitro was assessed using Matrigel-coated 8-μm Transwell (BD Biosciences). Briefly, 200 μL of cells (4 × 105 cells/mL) was added to the upper Transwell chamber, and 700 μL of complete medium was added to the lower Transwell chamber. After transfection for 48 h, the cells were fixed with 4% formaldehyde for 10 min at room temperature, and the invaded cells were then stained with 0.5% crystal violet (C8470; Solarbio) for 30 min at room temperature. The number of invading cells on the lower membrane surface was counted under a microscope in 5 predetermined fields for each membrane at 200× magnification.
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6

Evaluating Cell Proliferation via CCK-8 and Colony Assays

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Cell proliferation was evaluated using the Cell Counting Kit-8 (CCK-8) assay kit (AR1191, Boster Biological Technology., LTD, Wuhan, China) and colony formation assays. For the CCK-8 assay, cells (1000 cells/well) were plated in 96-well plates and treated with CCK-8 solution at 0 h, 24 h, 48 h, and 72 h. The absorbance was measured at 450 nm using an enzyme-linked immunosorbent assay reader (DNM9606, Beijing Perlong Technology Co., Ltd, Beijing, China).
In the colony formation assay, cells were treated with 0.25% trypsin-EDTA (T1300, Solarbio Co., Ltd. Beijing, China). The reaction was stopped by adding complete medium containing 10% FBS (tb-534237681231, GIBCO, New York, USA). After 1–2 weeks of incubation, cells were fixed with 4% paraformaldehyde for 30 min at 4 °C and stained with 0.5 mL of 0.1% crystal violet (C8470, Solarbio Co., Ltd. Beijing, China). Subsequently, cells were rinsed with PBS, and colonies were photographed.
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7

Transwell Assay for Cell Invasion

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The cells were digested with trypsin, and then, resuspended in serum‐free medium (1 × 105 cells/ml). Next, 150 μl of cell suspension of each group was added to the upper chamber of the Transwell chamber (3428, Corning, USA) pre‐coated with Matrigel (354230, BD, USA), and 500 μl of complete medium containing 10% of FBS was added to the lower chamber. After 48 hours of incubation, the chamber was removed, and then, the cells on the membrane were fixed with 950 ml/L of ethanol and stained with 0.1% of crystal violet solution (C8470, Solarbio, China). Finally, the invasive cells from five randomly chosen fields of each sample were counted under an inverted microscope (magnification ×200).
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8

Crystal Violet Staining of Cultured Cells

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The cells were collected in the logarithmic growth phase of the cells and seeded in a six-well plate at 900 cells per well. After one week of culture, fixation was carried out using 4% paraformaldehyde, and the cells were stained with crystal violet (Solarbio, C8470, China).
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9

Quantifying Candida albicans Biofilm Biomass

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CV assay is the most commonly used quantitative technique for detecting biomass accumulation in microplate method. Specimens (n=5 per group) with C. albicans biofilms were rinsed with PBS to remove nonadherent fungi and then air dried for 20 min. The air-dried specimens were submerged in 100% methyl alcohol for 15 min for fixation and then stained with 0.1% CV solution (C8470, Solarbio, China) for 15 mins. The bound dye was extracted from the stained cells with 95% ethanol solution. Biomass accumulation was then quantified by measuring the optical density of the CV/ethanol extract at a wavelength of 600 nm in a microplate reader (SpectraMax M5, Molecular Devices, USA).
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10

Cell Migration and Invasion Assays

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Cell migration was detected by wound healing assay. HT29 and SW620 cells transfected with si-ACTL8 and si-NC were seeded in six-well plate at a density of 5×105 (link) cells per well, and cultured to 100% confluency before transfection. Then, a wound was created with a pipette tip. After washing the shedding cells, the remaining cells were cultured in medium without FBS. At 0 and 48 hours after injury, images were taken using Nikon Eclipse TS100 Microscope (Nikon, Tokyo, Japan). The assay was independently repeated three times.
To obtain more convincing results, transwell cell invasion assay was performed as follows. After spreading basement membrane (356234; Corning, Corning, NY, USA) in the upper chamber, 1×105 (link) cells/well were incubated with serum-free medium. Medium containing 10% FBS was added into the lower chamber. After 48 hours, cells attached to the lower surface were stained with 0.1% crystal violet (C8470; Solarbio). The migrated cells were counted under a light microscope in five predetermined fields (magnification, ×200). The assay was independently repeated three times.
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