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Simoa hd 1 platform

Manufactured by Quanterix
Sourced in United States

The Simoa HD-1 platform is a highly sensitive and precise immunoassay system designed for the detection and quantification of various biomolecules, such as proteins and nucleic acids. The platform utilizes single-molecule array (Simoa) technology to enable the measurement of analytes at exceptionally low concentrations, providing enhanced sensitivity compared to conventional immunoassay methods.

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26 protocols using simoa hd 1 platform

1

Sensitive Detection of Full-Length Tau

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For sample types in which the levels of FL tau were too low to measure by ELISA (i.e., CSF and plasma exosome lysates), tau was measured using a Simoa (single molecule analysis)-based version of our FL assay and a Simoa HD-1 platform (Quanterix, Lexington, MA, USA). The C-terminal antibody, TauAB (a generous gift from Andy Billinton and Mike Perkinton of MedImmune), was used for capture and the N-terminal Tau12-biotin antibody (Cat. #MAB2241; Millipore, Billerica, MA, USA) for detection. Beads were activated with 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC; Cat. #22980; ThermoFisher, Waltham, MA, USA) and coated with TauAB. Tau12 was biotinylated using N-hydroxysuccinimide-polyethylene glycol (NHS-PEG4)-biotin (Cat. #21330; ThermoFisher, Waltham, MA, USA). Standards (human tau 381; Cat. #T0201; MilliporeSigma, St. Louis, MO, USA) and blanks were prepared using sample buffer and assayed in triplicates while samples were assayed in duplicate. Standard curves were fitted and LLoQs determined as with the mid-region and p181 tau assays. For the experiments shown, the LLoQ of the FL Simoa assay was 0.74 pg/mL. Full validation of this assay will be described in a separate publication [79 ].
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2

Plasma Biomarker Analysis for Neurodegenerative Disorders

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Venous blood was collected in tubes containing EDTA and centrifuged at 2,000 × g for 10 min at 4°C. The obtained plasma was divided into ~500 μl aliquots and frozen at −80°C. All samples underwent no more than three freeze-thaw cycles (Keshavan et al., 2018 (link)). The samples were rapidly thawed at 22 ± 2°C and then centrifuged at 10,000 × g prior to analysis to prevent any sample debris from interfering with the measurements. Plasma Aβ42, Aβ40, t-tau, and NfL concentrations were measured simultaneously using the single-molecule array (SIMOA)-HD1 platform (SIMOA; Quanterix, Billerica, MA, USA), which employed an automated SIMOA principle. Briefly, Aβ42, Aβ40, and t-tau levels were measured using a multiplex array (Neurology 3-Plex A Advantage Kit, N3PA), and NfL levels were measured using a single-analyte array (NF-light). The samples were measured using a two-step immunoassay. All analytical procedures were performed according to the protocol of the manufacturer by well-trained technicians who were blinded to the state of participant and clinical data, according to the protocol of the manufacturer. Samples with coefficients of variance (CV) of >20% were excluded from the analyses. In this study, the within-batch CV of all samples was <5%.
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3

Serum Cytokine Quantification using Simoa

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Serum cytokines IL-6, IL-10, TNFα and IL-1β were quantified using the Simoa HD-1 platform from Quanterix (Billerica, MA) according to manufacturing guidelines and as specified by Stukas et. al (55 (link)).
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4

Exosomal PD-L1 Quantification Using Simoa

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Exosomal PD-L1 protein was measured with a SimoaTM PD-L1 Reagent Kit (Quanterix Corp, Lexington, MA). In short, all isolated exosome samples were loaded at a mass of 280 μg and then diluted with sample diluent to 130 μL for single-well detection. Standard samples were added to a 96-well plate. After the completion of the sample preparation, beads, detector, and SBG were loaded into the reagent holder, and RGP was loaded into the tube holder. Then, the sample was transferred to the Simoa Disc, using oil to seal the sample so that the signal was only in the well. Finally, pictures were taken, and the concentration was analyzed on a Simoa HD-1 platform (Quanterix Corp).
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5

Serum Neurofilament Light Chain Assay

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Serum NfL was acquired and processed using methods described previously.22 (link) In short, blood was collected in the morning under fasting conditions by venipuncture using red top plain Vacutainer tubes (Becton, Dickinson and Company). Tubes were centrifuged at 2000 × g at room temperature for 15 minutes after clotting. Serum was taken into a single transfer tube (SARSTEDT AG & Co.) and frozen on dry ice. Measurements were performed using a single-molecule array assay using the capture monoclonal antibody 47:3 and the biotinylated detection antibody 2:1 (UmanDiagnostics AB).37 The samples were measured in duplicate on a Simoa HD-1 platform (Quanterix) using a two-step neat assay. Serum samples were measured at 1:4 dilution (Tris-buffered saline, 0.1% Tween 20, 1% non-fat milk powder, HeteroBlock [300 ug ml−1; Omega Biologicals]). The amount of time between biomarker collections (imaging, CSF, plasma) per visit was 1 day ± 12.4 days (median, interquartile range [IQR]).
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6

Plasma Total Tau Measurement Protocol

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Blood was collected in-clinic after an overnight fast. The blood was centrifuged, aliquoted, and stored at −80°C. Plasma total tau was measured on the Quanterix Simoa-HD1 Platform, as described previously [21 (link)]. Briefly, samples were thawed on wet ice, centrifuged at 500xg for 5 minutes at 4C, diluted 1:8 in kit sample buffer, and analyzed according to the kit protocol on the Simoa-HD1 [21 (link)].
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7

Alzheimer's Biomarker Profiling Protocol

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Fasting blood samples were collected according to the international guidelines for AD biomarker studies.37 (link) Our previously validated proteomic profile was assayed using electrochemiluminescence (ECL) per our published methods on the following biomarkers: fatty acid binding protein 3 (FABP3); beta 2 microglobulin (B2M); C-reactive protein (CRP); thrombopoietin (TPO); alpha 2 macroglobulin (A2M) eotaxin 3; tumor necrosis factor alpha (TNFa); tenascin C (TNC); interleukin (IL)-5, IL-6, IL-7, IL-10, IL-18; I-309; factor VII (factor 7); soluble intercellular adhesion molecule 1 (sICAM1); circulating vascular cell adhesion molecule 1 (sVCAM1); pancreatic polypeptide (PPY); thymus activation regulated chemokine (TARC); and serum amyloid A (SAA).27 (link),28 (link),30 (link) Glucagon-like peptide 1 (GLP-1), insulin, glucagon, and peptide YY (PYY) were also assayed weekly via ECL multiplex kit. The ITR Biomarker Core has conducted > 20,000 assays using these specifications and the platform performs excellently (coefficient of variation [CV] < = 10%). The Quanterix Simoa HD-1 platform was used for assay of plasma amyloid beta (Aβ)40, Aβ42, total tau (3-plex plate), and neurofilament light (NfL). The ITR Biomarker Core has conducted n > 5000 assays with CVs < = 5%.
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8

Quantification of Neurofilament Light (NfL) Levels

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The quantification of NfL levels has previously been described [26 (link)]. In short, the NF-light® assay was established on the ultra-sensitive Simoa™ HD-1 platform (Quanterix©, Lexington, MA, USA) [12 (link)]. According to the manufacturer, the limit of detection and limit of quantification for NfL are 0.038 and 0.174 pg/mL, respectively. The calibrator range is 0–500 pg/mL with linearity from 4–128 times dilution. In our laboratory, the intra- and inter-assay coefficients of variation are 4.3% and 6.4%, respectively. Positive controls in two levels (3.63–5.71 and 125–187 pg/mL) were supplied with the NF-light® assay and included in duplicates in each run. A volume of 68 µL patient serum was used for each analysis.
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9

Plasma NfL Measurement Protocol

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Non‐fasting blood was collected into tubes containing ethylenediaminetetraacetic acid as anticoagulant and centrifuged at 2000g for 10 minutes at 4°C. Plasma (approximately 2 mL) was extracted, mixed well, and aliquoted in 0.2 mL aliquots that were stored in polypropylene tubes at −80°C until use. On average, blood samples were collected within 9 months (standard deviation [SD] = 8 months, maximum time 35 months) and 2 months (SD = 5 months, maximum time 31 months) of MRI and amyloid PET scans, respectively. Plasma NfL was measured blinded to clinical information at the Sahlgrenska Academy at University of Gothenburg, Sweden on the Simoa HD‐1 platform (Quanterix), using commercially available kits (Quanterix).
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10

Complement System Activation Profiling

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Wieslab® Complement System Screen kits (Wieslab AB, Malmö, Sweden) were used to measure complement activation via the CP, the LP (MBL-dependent), and the AP in the serum of participants according to the manufacturer’s instructions. All determinations were performed in duplicate.
Serum and EDTA-plasma concentrations of complement activation products were measured using ELISA kits according to the manufacturers' instructions, with sample dilutions adjusted to fall within the linear range of standard curves. MicroVue™ EIA kits from Quidel Corporation (San Diego, USA) were used to measure C5a (cat #A025), sC5b-9 (cat #A029), Ba (cat #A033), Bb (cat #A027), and C4d (cat #A009). Hycult Biotech kits (Uden, NE) were used to measure FD (cat #HK343) and FH (cat #HK342). Serum levels of IL-6 were measured using the Simoa HD-1 platform (Quanterix Corporation, Billerica, USA), as previously reported [25 (link)]. Reported precision for each complement ELISA kit are listed as follows (analyte, coefficient of variation): C5a, ≤ 3.9%; sC5b-9, ≤ 6.8%; Ba, 2.3%; Bb, ≤ 4%; C4d, ≤ 9.7%. Precision characteristics were not available for FD and FH kits. All samples were tested in duplicate and only values with a CV of ≤ 15% were included in analyses.
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