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9 protocols using tweak

1

TWEAK-induced NFκB signaling in DU145/RasB1 cells

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DU145/RasB1 cells were treated with TWEAK (25ng/mL, R&D Systems, Minneapolis, MN, USA) for 60 min. Total RNA was extracted using mirVana Isolation Kit (Thermo Fisher Scientific, Waltham, MA, USA). After TWEAK treatment, samples were validated for increased expression levels of known NFκB target genes, IL8 and IκBα, and submitted for microarray analysis. Microarray analysis was performed with Affymetrix Human Genome U133A 2.0 Array. Fold changes in gene expression were determined by ANOVA using Partek Genomics Suite (Partek, Chesterfield, MO, USA).
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2

TWEAK-induced NFκB signaling in DU145/RasB1 cells

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DU145/RasB1 cells were treated with TWEAK (25ng/mL, R&D Systems, Minneapolis, MN, USA) for 60 min. Total RNA was extracted using mirVana Isolation Kit (Thermo Fisher Scientific, Waltham, MA, USA). After TWEAK treatment, samples were validated for increased expression levels of known NFκB target genes, IL8 and IκBα, and submitted for microarray analysis. Microarray analysis was performed with Affymetrix Human Genome U133A 2.0 Array. Fold changes in gene expression were determined by ANOVA using Partek Genomics Suite (Partek, Chesterfield, MO, USA).
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3

Neutralizing Antibodies for Mouse Cytokines

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Neutralizing antibodies to mouse TNF (rat anti-mouse; clone XT3.11) and IL-17A (mouse anti-mouse; clone 17F3) were in vivo grade from Bio X Cell (Lebanon, NH, USA). Mouse anti-mouse TWEAK neutralizing antibody (clone mP2D10) was produced by Biogen, Inc. Isotype control antibodies were rat IgG1, mouse IgG1, and mouse IgG2a, all from Bio X Cell (Lebanon, NH, USA) for the TNF, IL-17A and TWEAK neutralizing antibodies, respectively. All recombinant human cytokines, TWEAK, TNF, and IL-17A, were from R&D Systems (Minneapolis, MN, USA).
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4

Isolation and Stimulation of CD19+ B Cells

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Spleen cells were washed with phosphate-buffered saline (PBS; pH 7.2). After centrifugation at 1300 rpm and at 4 °C, the cells were incubated with CD19-coated magnetic beads (Miltenyi Biotec, Bergisch Gladbach, Germany) and isolated on MACS separation columns (Miltenyi Biotec). Positively selected CD19+ B cells were stimulated with TWEAK (0.1 ng/ml; R&D Systems, Minneapolis, MN, USA) for 3 days. Total RNA was extracted using the TRI Reagent (Molecular Research Center, Cincinnati, OH, USA).
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5

TWEAK Stimulation of Myotubes

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For observation and stimulation of fully-differentiated myofibres, cells were grown to full confluency and subsequently treated with low-serum differentiation medium, which included 1% FCS, until myotubes were visible31 (link). Cells were then submitted to FCS-free medium containing 30, 60 and 120 ng/ml respectively of recombinant TWEAK (R&D Systems, #1237-TW-025). The stimulation was sustained for 24 h.
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6

Cytokine and Hyaluronan Regulation in Orbital Fibroblasts

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Proinflammatory cytokine, hyaluronan, and TWEAK levels in the culture supernatant of confluent orbital fibroblasts or in serum were determined using commercially available ELISA kits (IL-6, IL-8, MCP-1, and hyaluronan: R&D Systems; TWEAK: Bender Medsystems, Vienna, Austria) according to the manufacturers’ instructions. To investigate whether TWEAK-induced cytokine production is dependent on Fn14, cells were incubated with the Fn14-specific mAb ITEM4 (2.5 μg/ml) prior to stimulation. For comparison, GO cells were exposed to the signaling pathway inhibitors PD98059, SP600125, SB203580, and LY294002 (20 μM) and SC514 (10 μM) for 1 h prior to stimulation with TWEAK. The production of hyaluronan induced by TWEAK was analyzed in the same manner. hyaluronan concentration in the sample was determined from a standard binding curve generated with known amounts of hyaluronan. Samples were diluted 1:10 before analysis, and the mean value of triplicate samples is reported.
To analyze serum level of TWEAK, blood samples were drawn into test tubes containing 10% (v/v) sodium citrate. Platelet-free plasma was obtained by centrifugation at 3000 × g for 15 min at room temperature and stored at −80°C until analysis. Serum level of TWEAK protein (pg/ml) was measured using a commercial ELISA kit. Each sample was tested three times. All serum samples were tested in the same assay.
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7

Cytokine Reconstitution and FN14 Inhibitor Protocol

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TWEAK (human and mouse), BAFF, CD40L, CRP, IL1β, IL6, IL8, Leptin, TGFβ1, TGFβ3, and TNFα cytokines were purchased from R&D Systems and reconstituted per the manufacturer's instructions (Supplementary Table S1). Carboplatin for in vitro assays was reconstituted per the manufacturer's instructions (R&D Systems; Supplementary Table S1). The FN14 inhibitor L542-0366 was reconstituted in DMSO with sonication until dissolved per experiment (Millipore; Supplementary Table S2).
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8

Biomarker Analysis via ELISA

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All biomarkers were analysed by specific ELISA (HER2, TWEAK and VCAM-1) (R&D, Minneapolis, Minnesota, USA). Urine creatinine was measured using a colorimetric kit from Cayman Chemical (Ann Arbor, Michigan, USA). Samples were run in duplicate by a technician blinded to patient category. Urine creatinine was used to normalise for urine concentration. Normalisation to creatinine did not change the overall conceptual results in this study. Therefore, raw biomarker levels are shown in the figures and tables since normalisation to urine creatinine did not change the results and would be an additional complication in transitioning this assay to point-of-service assay.
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9

Cytokine and Inhibitor Reconstitution

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TWEAK (human and mouse), BAFF, CD40L, CRP, IL-1β, IL-6, IL-8, Leptin, TGFβ1, TGFβ3, and TNF-α cytokines were purchased from R & D Systems and reconstituted per manufacturer’s instructions (Table S1). Carboplatin for in vitro assays was reconstituted per manufacturer’s instructions (R & D Systems, Table S1). FN14 inhibitor L542-0366 was reconstituted in DMSO with sonication until dissolved per experiment (Millipore, Table S2).
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