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23 protocols using synergy mx monochromator based multi mode microplate reader

1

Spectrophotometric Laccase Activity Assay

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The standard laccase activity was determined by spectrophotometric measurements using the Synergy™ Mx Monochromator‐Based Multi‐Mode Microplate Reader (BioTek). The standard reaction mixture contains 198 μL of 0.5 mm ABTS (ε420 = 3.60 × 104m−1·cm−1) in pH 3.0 McIlvaine's buffer and 2 μL of the enzyme solution. The enzyme assay was performed at 30 or 65 °C. One unit of enzyme activity was defined as 1 μmole of substrate transformed to product per minute 44. The kinetic study of DLac was performed using 1.25 ~ 800 μm ABTS at pH 3.0, 3.13 ~ 2000 μm DMP (ε477 = 1.48 × 104m−1·cm−1) at pH 4.0, and 18.78 ~ 3000 μm guaiacol (ε465 = 1.2 × 104m−1·cm−1) at pH 4.0. The initial rates were acquired from the linear portion of the experimental curve, and the kinetic parameters were determined using the Michaelis–Menten model in SigmaPlot 10.0.
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2

Cytotoxicity Assay for Neuroblastoma Cells

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Prior to treatment, cells were cultured overnight in 96-well microtiter plates (Greiner Bio-One Inc, Monroe, NC). LAN-5, SK-N-Be(2)c, or SK-N-SH cells were seeded at concentrations of 1.5, 5.0, or 1.0 × 104 cells per well, respectively. All NB cell lines were suspended in 90 μl of medium per well. After overnight incubation, NB cells were treated with increasing concentrations of SSZ (0–400 μM) or DFMO (0–25 mM) for 48 h. An equal concentration of DMSO was used as a control. Cell viability was measured with the CellTiter 96 AQueous One Solution Cell Proliferation Assay (MTS Assay) (Promega BioSciences, San Luis Obispo, CA) following the manufacturer’s protocol. Briefly, 20 μL of CellTiter 96 AQueous One Solution Reagent was added to each well and incubated at 37 °C for 3 h. The quantity of formazan product that is proportional to the number of living cells in the culture was measured at 490 nm using the Synergy Mx Monochromator-Based Multi-Mode Microplate Reader (BioTek Instruments, Inc, Winooski, VT). Optical density (OD) readings were calculated and evaluated using Excel spreadsheet software (Microsoft, Redmund, WA).
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3

AGE Fluorescence Quantification Protocol

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AGE intrinsic fluorescence (AGE-FL) was measured in triplicate at a standard concentration of 1 μg/μL in PBS buffer using Synergy Mx Monochromator-Based Multi-mode Microplate Reader (BioTek, Winooski, Vermont) in black microplate (Eppendorf, Hamburg, Germany). Total AGE-FL was measured at 360/10 nm excitation and 440/10 nm emission.
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4

Hormonal and Cytokine Responses to CP-101,606

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Hormonal responses were measured 2 h after the repeated administration of CP-101,606. The levels of hormones in serum or pituitary were measured using ELISA kits for GHRH, GH, corticosterone and thyroid hormones (T3, T4). The serum concentrations of cytokine were analyzed using the IL-6 ELISA kits. Absorbance was measured using a Synergy Mx Monochromator-Based Multi-Mode Microplate Reader (Biotek, Winooski, VT, USA).
The hormone and cytokine concentrations were calculated from 8–10 rats for the control and drug-treated group in the 5-day experiment or from 11–13 animals for the control and CP-101,606-treated group in the 3-week study.
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5

Quantifying Microbial Biomass via OD and Dry Weight

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After cultivation, OD600 was measured using either a Synergy™ Mx Monochromator-Based Multi-Mode Microplate Reader (BioTek) or NanoPhotometer (Implen GmbH, Germany). The dry-weight of a sample was measured by taking 1 or 2 mL of fermentation broth and filtering through pre-weighted cellulose nitrate membranes (0.45 μm pore size, 47 mm circle) using a filtration unit with a vacuum pump. Filters were dried at 60 °C for 96 h and weighed on an analytical balance. The conversion of OD600 values into dry cell weight was done using the following empirical correlation:
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6

Acridine Orange Lysosomal Permeability Assay

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Acridine orange is a versatile fluorescence dye that easily crosses the cell membrane and reversibly accumulates into acidified membrane-bound compartments, such as lysosomes. Acridine orange gives fluorescence emission in a concentration-dependent manner, which is red at high concentrations (e.g., in lysosomes) to green at low concentrations (e.g., in the cytosol), with yellow as intermediate (e.g., upon trapping in nucleoli). The ratio of red-to-green emission in comparison with controls may thus either monitor lysosomal leakage or change in lysosomal pH. rPMs were grown in 96-well culture plates. rPMs were first exposed with acridine orange (5 μg/ml) at 37°C for 15 min, which were rinsed, then incubated in HBSS with or without cART and NAC for the indicated times. Cells were examined at 1 h intervals using a Synergy™ Mx Monochromator-Based Multi-Mode Microplate Reader (BioTek Instruments, Inc. Winooski, VT, USA) with excitation wavelength at 485 nm and emission recorded at 530 and 620 nm. To further confirm cART-mediated lysosomal membrane permeabilization (LMP), cells were stained with GAL3 and LAMP2.
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7

Monitoring Lysosomal Integrity Using Acridine Orange

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Acridine orange is a fluorescent dye that easily traverses the cell membrane. It is a weak base, which reversibly accumulates into acidified membrane-bound compartments. The fluorescence emission of acridine orange is concentration-dependent, from red at high concentrations (e.g., in lysosomes) to green at low concentrations (e.g., in the cytosol), with yellow as intermediate (e.g., upon trapping in nucleoli). The shift in the red-to-green emission ratio in comparison to controls may thus either monitor lysosomal leakage or change in lysosomal pH. In our fluorometric studies, cells were cultured in 96-well culture plates. Cells were first exposed with acridine orange (5 μg/mL) at 37 °C for 15 min. Cells were rinsed, then incubated in HBSS with or without cART for the indicated times. Cells were examined at 1-h intervals using a Synergy™ Mx Monochromator-Based Multi-Mode Microplate Reader (BioTek Instruments, Inc. Winooski, VT, USA) with the excitation wavelength at 485 nm and emission recorded at 530 and 620 nm.
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8

Cell Viability Assay via MTT

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In 96-well flat bottom plates (Costar, Corning, NY), cells were seeded at a density of 5000 cells/50ul. Cells were incubated overnight and the next day drug treatments were administered up to a final volume of 100ul. For MTT analysis, 42 μl of a 5-mg/ml solution of MTT tetrazolium substrate (Sigma) in phosphate-buffered saline was added and incubated for up to 2 hours at 37 °C. The resulting violet formazan precipitate was solubilized by the addition of 84 μl of 0.01 M HCl in 10% SDS (Sigma-Aldrich, St. Louis, MO) solution at 37 °C overnight. Plates were analyzed on a microplate reader at 570 nm (Synergy Mx Monochromator-Based Multi-Mode Microplate Reader, Biotek Instruments, Winooski, VT).
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9

Fluorescence Characterization of Cy5-Dendrimer

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The fluorescence spectra of the Cy5-conjugated dendrimer (BiD-TA-Cy5) were recorded in a phosphate buffer (0.1 M) using a Shimadzu RF-5301 spectrofluorometer with excitation at 645 nm and emission at 662 nm. To measure the fluorescence quantum yield of BiD-TA-Cy5, the absorbance at a wavelength of 645 nm and integrated fluorescence intensity following excitation at 645 nm of Cy5-conjugated dendrimer (BiD-TA-Cy5) and free Cy5 solutions at various concentrations were measured using the Synergy Mx Monochromator-Based Multi-Mode Microplate Reader (Biotek, Winooski, Vt., USA). The quantum yield was calculated using the previously described comparative method.47
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10

Measurement of Luminescent Bacteria Growth

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Growth of luminescent bacteria was measured as described previously [23 (link), 54 (link)]. Briefly, dilutions of 0.5–2.0 × 105D. discoideum cells infected with M. marinum pMV306::lux were plated on a non-treated, white F96 MicroWell plate (Nunc) and covered with a gas permeable moisture barrier seal (Bioconcept). Luminescence was measured for 72 h at 1 h intervals with a Synergy Mx Monochromator-Based Multi-Mode Microplate Reader (Biotek). The temperature was kept constant at 25°C.
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