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10 protocols using anti fluorescence quencher

1

Fluorescent Phalloidin Staining of Cells

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Each cell crawl was fixed in 4% paraformaldehyde for 15min. To remove the 4% paraformaldehyde, crawl pieces were immersed in PBS for 5 min × three times. About 0.1% triton X-100 (Beyotime, China, ST795) was added to the cells until the cells were completely covered and incubated at room temperature for 30 min. To remove 0.1% triton X-100, cell crawl pieces were submerged in PBS for 5 min × three times. Anti-stainTM488 Fluorescent Phalloidin (Solarbio, China, CA1610) was dripped, diluted with PBS at 1:100, and then dripped until the cells were completely covered for incubation. The cell crawl pieces were immersed in PBS for 5 min × three times to washout primary antibody. DAPI (Aladdin, China, d106471-5 mg) was added dropwise to completely cover the cells to counterstain the nuclei. The cell crawl pieces were immersed in PBS for 5 min × 3 times to remove DAPI. Adhesive tip drops were added half a drop of antifluorescence quencher (Solarbio, China, s2100) on the slide, cell crawl pieces were buckled onto the slide with antifluorescence quencher drop. The staining effect was observed under a fluorescence microscope.20 (link)
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2

CD44 Expression Dynamics in A549 Cells

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Changes in the expression of recep tor CD44 were evaluated by an immunofluorescent assay and confocal laser scanning microscopy (Leica SPE, Germany). Experimental groups included sCS NPs-HA (amounts of Cy3-labeled siRNA was 0.52 μg), and the cells cultured in the RPMI 1640 medium were the control group. A549 cells were cultured on glass slides in 24-well plates for 24 hrs, followed by their incubation with the medium with or without sCS NPs-HA. Samples were collected at 4, 8, 16, 24, and 48 hrs and fixed in 4% paraformaldehyde for 15 min, followed by their permeabilization with 0.1% Triton X-100 for 10 min and blocking with 5% BSA for 30 mins. The slides were incubated overnight with a mouse polyclonal anti-CD44 antibody (CST, Beverly, MA, USA) at 4°C, followed by treatment with fluorescein isothiocyanate–conjugated secondary antibodies (mouse anti-rabbit fluorescent secondary antibody) (Abcam, Cambridge, UK) for 1 hr at room temperature. After a wash with PBS, nuclear staining was performed by the incubation of samples with DAPI (0.5 mg/mL) for 5 mins. The slides were washed once with PBS for 5 mins and sealed with an antifluorescence quencher (Solarbio, Beijing, China). The samples were examined under the confocal laser scanning microscope. At the same time, cells were collected at different time intervals and PCR experiments were performed to analyze the changes of CD44.
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3

Visualizing Cellular Phagocytosis

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To assess phagocytosis visually, K7M2 and RAW264.7 cells were co-cultured as aforementioned. The co-cultured cells were added to a 24-well plate with round coverslips and cultured for 48 h. Cells that had grown on the coverslips were fixed using 4% formaldehyde at room temperature for 30 min, and counterstained using 10 µg/ml DAPI (Beijing Solarbio Science & Technology Co., Ltd.), for 10 min, followed by mounting in anti-fluorescence quencher (Beijing Solarbio Science & Technology Co., Ltd.). Finally, images were obtained by laser confocal microscopy (×63 magnification) (Leica GmbH).
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4

TUNEL Staining of Decalcified Bone Tissue

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The bone tissue was fixed, decalcified, dehydrated, made transparent, embedded, sliced, and dewaxed (the procedure was the same as that outlined for H&E staining). Then, the sections were stained according to the instructions of the TUNEL detection kit (Vazyme, Nanjing, China) and sealed with an anti-fluorescence quencher (Solarbio). The images were collected by a biomicroscopy (Olympus).
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5

TUNEL Assay for Apoptosis Quantification

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Tunel staining using the TUNEL Apoptosis Detection Kit (Wanlei bio, Shenyang, China) was performed according to the manufacturer’s instructions. The paraffinized sections were dewaxed to water and rinsed with phosphate buffer saline (PBS) three times. Then, the tissue sections underwent heat-induced epitope retrieval in citrate buffer followed by a cooling-down period. Next, the paraffin sections were rinsed with PBS and added a tunel assay solution and then incubated at 37°C in the dark for 90 min. Sections were then rinsed with PBS and counterstained with 4’,6-diamidino-2-phenylindole (DAPI) for nuclear labeling. Finally, the anti-fluorescence quencher (Solarbio, Beijing, China) was used to seal the sections. The staining results were observed under a fluorescent microscope (DS-U3, Nikon, Japan), in which tunel-positive expression was recognized by green fluorescence, while DAPI-positive was blue. The apoptotic index’s final calculation was reached according to the following formula: apoptotic index=tunel positive cells/DAPI positive cells (n = 5).
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6

Immunofluorescence Staining of Cell Cultures

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Cells were seeded on slides for 24 h and then treated as indicated in the figures. The cells were fixed in 4% paraformaldehyde for 30 min and rinsed in PBS three times for 5 min each time. Subsequently, the slides were incubated in 0.5% Triton X-100 for 15 min at room temperature for permeabilization, and nonspecific protein binding was blocked by incubating the cells with goat serum for 30 min at room temperature. Then, the cells were incubated with a primary antibody overnight at 4 °C. After rinsing in PBS three times for 5 min each time, the cells were incubated with a dye-conjugated secondary antibody for 1 h at room temperature. Then, the cells were washed three times in PBS and incubated with DAPI for 10 min at 37 °C before being washed in PBS three times for 5 min each time. An anti-fluorescence quencher (Solarbio, Beijing, China) was used in the last step, and images were acquired using a confocal microscope. A detailed list of the antibodies used is provided in the Supplemental Information.
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7

Visualizing BspJ Protein Localization in HEK293T Cells

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The HEK293T cells were cultured on cell slides in a 12-well plate. When the cell density reached 80%, Lipofectamine 3000 (Invitrogen, United States) was used to transfer the constructed vector pDsRed2-C1-BspJ to HEK293T cells. Post-transfected 24 h, discarded the cell culture medium, and stained the nucleus with DAPI (Solarbio, China) for 5 min. This step was protected from light. Anti-fluorescence quencher (Solarbio, China) was then added. The location of the BspJ protein in HEK293T cells was observed under a confocal microscope (Nikon C2i+, Japan).
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8

Immunofluorescence Staining Procedure

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The cells were fixed with 4% paraformaldehyde (Beyotime) for 30 min, treated with 0.5% Triton (Beyotime) for 10 min, then closed with 0.5% BSA (Solarbio) for 30 min at room temperature. The closure solution was discarded, and the cells were then incubated with the primary antibody overnight at 4 °C. The cells were treated for one hour at room temperature with fluorescent secondary antibody dilution (Abbkine), shielded from light, and washed three times with PBS. PBS was blotted dry, and appropriate amount of anti-fluorescence quencher (Solarbio) was added to cover the bottom of the confocal dish. Place it under a confocal microscope, observe and take pictures. Images were analyzed using Image J.
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9

Nrf2 Expression Analysis in Tissues

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Paraffin sections were dewaxed and hydrated, and cell slides were fixed in 4% paraformaldehyde. The sections were incubated in 0.1% triton X-100 (Beyotime) for 30 min and in goat serum for 15 min. Then, the sections were incubated with Nrf2 antibody (1:200) at 4 °C overnight, and with Cy3-labeled goat-anti-rabbit IgG (1:200, Beyotime) at 37 °C for 1 h. DAPI (Beyotime) was added dropwise into the sections. The sections were then washed with phosphate buffered solution buffer and added with anti-fluorescence quencher (Solarbio) to slow down the fluorescence quenching speed. The staining was observed under a fluorescence microscope (Olympus) at 400× magnifications.
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10

TUNEL Assay for Apoptosis Detection

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The kidney sections were stained with TUNEL reagent (Roche; Basel, Switzerland) for the in situ detection of apoptosis. The 5 µm sections were
permeabilized with 0.1% Triton X-100 at room temperature. The permeabilized sections were incubated with prepared TUNEL solution (the enzyme solution and label solution at a 1:9 ratio), and
kept in the dark for 60 min at 37°C in a humidified chamber. After washing with PBS, DAPI (Aladdin; Shanghai, China) was used for counterstaining for 5 min. Subsequently, anti-fluorescence
quencher (Solarbio; Beijing, China) was added to seal the sections. The images were observed under a BX53 microscope (400×).
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