The largest database of trusted experimental protocols

10 protocols using anti cd63 antibody

1

Autophagy regulation mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
RPMI-1640 and DMEM medium and foetal bovine serum (FBS) were obtained from GIBCO (Grand Island, NY). Trizol, PrimeScript RT Master Mix and SYBR green PCR master mix were purchased from Takara (Shiga, Japan). Antibodies against LC-3I/II, p62, VPS34, and HDAC6 were purchased from Cell Signaling Technology (Danvers, USA), antibodies against GFP, GRP78 and acetyl-lysine were from Abcam (Cambridge, UK), and anitbodies against β-tubulin, β-actin and GAPDH were from Abmart (Shanghai, China). The anti-CD63 antibody was purchased from Santa Cruz Biotechnology (Santa Cruz, USA), and the anti-FITC-, -TRITC-, -Cy5- and -HRP-conjugated secondary antibodies as well as ER-Tracker and Lyso-Tracker were obtained from Invitrogen (Carlsbad, USA). Sodium butyrate, vorinostat (SAHA), tubastatin A and 3-methyladenine were obtained from Cayman Chemical (MI, USA). Anti-FLAG M2 mAb and anti-FLAG M2 agarose were obtained from Sigma (St. Louis, USA).
+ Open protocol
+ Expand
2

Exosome Surface Protein Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolated exosomes were analyzed according to their surface tetraspanin proteins using a modified protocol (Barranco et al., 2019 (link)). Conjugated antibodies against CD9, CD63, and CD81 were used to label the exosomes. 50 μL of Exosome MicroBeads was added to the exosome sample, vortexed and incubated for 1 h at room temperature. Following incubation exosome bound beads were further washed in PBS/1% BSA, blocked with 10% BSA, and stained with Anti-CD9 [CD9 (Santa Cruz Biotechnology, (C-4):sc-13118) conjugated with AlexaFlour@488, Anti-CD63 Antibody (Santa Cruz Biotechnology, MX-49.129.5: sc-5275) conjugated with AlexaFlour@647, and Anti-CD81 Antibody (Santa Cruz Biotechnology, (1.3.3.22): sc-7637] conjugated with AlexaFlour@546, all in concentration 1 µg/mL. The stained sample was incubated for 1 h at room temperature then washed and resuspended in FACS buffer for further analysis using BD FACS Calibur.
The size and the size distribution of both Ex and LUT-Ex were determined using Zetasizer (Malvern Instruments, UK) after their appropriate dilution with water. Additionally, their morphology was examined using transmission electron microscopy (TEM) (Jeol, JEM-100 CX electron microscope, Tokyo, Japan) after being stained with 1% w/v phosphotungstic acid. Their total protein content was quantified using the BCA protein assay kit (Sigma-Aldrich, USA).
+ Open protocol
+ Expand
3

Urinary Exosomal Protein Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein of urinary exosomes was extracted with Urine Exosome RNA Isolation Kit, Appendix A (Biotek Corporation, Thorold, ON, Canada) according to manufacturer's instructions. Equal amounts of protein lysates were subjected to Western blotting analysis by using anti-CD63 antibody (SantaCruz Biotechnology, Dallas, TX, USA), according to standard protocols.
+ Open protocol
+ Expand
4

Western Blot Analysis of Extracellular Vesicle Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were loaded onto 4–12% Tris-glycine gels. After electorophoresis and transferring to nitro-cellulose membranes, the membranes were blocked in Tris-buffered saline containing 5% no-fat milk for 60 min at room temperature. Membranes were then incubated overnight at 4 °C with anti-Ascl1 antibody (1:100, Santa Cruz Biotechnology, sc-374104), anti-CD63 antibody (1:200, Santa Cruz Biotechnology, sc-5275), anti-Alix antibody (1:1000, Cell Signaling Technology, 2171), anti-TSG101 antibody (1:200, Santa Cruz Biotechnology, sc-7964), anti-ApoA1 antibody (1:200, Santa Cruz Biotechnology, sc-69755), anti-HRS antibody (1:1000, Santa Cruz Biotechnology, sc-271455), anti-Occludin antibody (1:500, Invitrogen, 71-1500), anti-Claudin-5 antibody (1:1000, Invitrogen, 35-2500) and anti-β-actin antibody (1:2000, Sigma-Aldrich, A5441). After incubation with peroxidase-conjugated secondary antibodies, visualization was enhanced by chemiluminescence (GE Healthcare, NA931- anti-mouse, or NA934- anti-rabbit). Optical density was assessed using the ImageJ. Uncropped versions of the blots are shown in the Source Data.
+ Open protocol
+ Expand
5

Characterization of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
EVs were separated via ultracentrifugation as described before (26 ) from LX2 cell culture medium that had been cultured for 72 hours with EV free FBS. Multi-parameter nanoparticle optical analysis (Nanosight) and Transmission Electron Microscope (TEM) were utilized to determine the shape, size and tracking the brownian movement of EVs. Western blot for EV-specific proteins was performed with anti-CD63 antibody (Santa Cruz Dallas, Texas) and anti-TSG-101 antibody (Abcam Cambridge, MA) as described before (26 ).
+ Open protocol
+ Expand
6

Dual Immunofluorescence Staining of CD63 and TIMP-1 in Breast Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MDA-MB-231, BT-549, Cis-Pt-R and Dox-R (1.0 × 105 cells/well, 24-well plates) were seeded on a coverslip for 24 h and then fixed in 4% paraformaldehyde/DPBS for 10 min at room temperature (RT). For CD63 staining, cells were subjected to blocking in 3% FBS for 1 h at RT and then incubated with anti-CD63 antibody (Santa Cruz Biotechnology), washed three times in DPBS and incubated with Fluor 488 anti-mouse (Invitrogen). For dual staining of CD63 and TIMP-1, cells were subjected to blocking in 2% bovine serum albumin for 1 h at RT and then incubated with anti-CD63 (Proteintech, Rosemont, IL, USA) and anti-TIMP-1 (ThermoFisher Scientific) antibodies, followed by three washes with DPBS and incubation with Alexa Fluor 488 anti-mouse (anti-TIMP-1) and Alexa Fluor 567 anti-rabbit (anti-CD63). Finally, after three washes in DPBS, cells were incubated with 1.5 μM 4′,6-Diamidino-2-phenylindole (DAPI, Sigma-Aldrich) and mounted with glycerol/DPBS. Samples were visualized by Zeiss LSM 700 META confocal microscopy equipped with a Plan-Apochromat 63×/1.4 Oil DIC objective.
+ Open protocol
+ Expand
7

Western Blot Analysis of Cellular Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extraction and western blotting were performed as described previously [46 (link)]. The antibodies were as follows: anti-α-SMA (abcam, ab5694), Vimentin (Proteintech, 10366-1-AP), anti-E-cadherin antibody (proteintech, 20874-1-AP), anti-CD63 antibody (santa cruze, sc-5275), anti-CD81 antibody (proteintech, 27855-1-AP), anti-TSG101 antibody (Santa Cruz, California, United States, sc-7964), anti-RNF43 antibody (bioss, bs-24331R), anti-β-catenin antibody (proteintech, 51067-2-AP), anti-ALDH1A1 antibody (proteintech, 15910-1-AP), anti-OCT4 antibody (proteintech, 11263-1-AP), anti-N-cadherin antibody (proteintech, 66219-1-Ig), and anti-α-tubulin (abcam, ab7291). Protein levels were normalized to α-tubulin and analyzed by Image J software.
+ Open protocol
+ Expand
8

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were extracted from the ultracentrifugation pellets and separated on a denatured SDS–polyacrylamide gel before transfer to a polyvinylidene difluoride membrane. The blotting membrane was blocked with bovine serum albumin and incubated with goat polyclonal anti-Sema4D antibody (1:100; Santa Cruz, sc-16632), rabbit polyclonal anti-CTSK antibody (1:100; Santa Cruz, sc-30056), goat polyclonal anti-tartrate-resistant acid phosphatase antibody (1:100; Santa Cruz, sc-30833), rabbit polyclonal anti-CD9 antibody (1:100; Santa Cruz, sc-9148), rabbit polyclonal anti-CD63 antibody (1:100; Santa Cruz, sc-15363), rabbit polyclonal anti-Flotillin-1 antibody (1:100; Santa Cruz, sc-25506), goat polyclonal anti-TSG101 antibody (1:100; Santa Cruz, sc-6037) and rabbit polyclonal anti-calnexin antibody (1:100; Santa Cruz, sc-11397) followed by incubation with horseradish peroxidase (HRP)-coupled goat anti-rabbit IgG H&L (1:5,000, Abcam, ab6721) or HRP-coupled rabbit anti-goat IgG H&L (1:5,000, Abcam, ab6741), respectively. The proteins were detected using SuperSignal West Dura Extended Duration Substrate (Thermo Scientific, Prod # 34075). Supplementary Fig. 17 depicts uncropped western blots.
+ Open protocol
+ Expand
9

Sucrose Gradient Isolation and Analysis of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
EVs were analyzed using 10%- 40% sucrose (w/v) density gradient solution. A linear sucrose gradient was prepared with 12.6 ml of 10% (w/v) and 12.6 ml of 40% (w/v) sucrose solutions, mixed in a sucrose gradient device (Life technologies). An EV pellet isolated from 27 ml of conditioned medium was resuspended in 0.5 ml of PBS, loaded on top of the layered sucrose gradient and centrifuged at 18,000 × g at 4 °C for 15 h. Fractions containing EVs were harvested and the densities were determined by weighing each fixed volume. Each 1 ml fraction was then diluted in 26 ml of PBS, and ultracentrifuged for 1 h at 100,000 × g. EVs were lysed at 4 °C for 1 h in a lysis buffer containing 50 mM Tris-HCl, 1% Triton X-100, 2 mM PMSF (Sigma Aldrich), 1× Halt Protease inhibitor Cocktail (Thermo Scientific), 100 mM NaCl, 1 mM EDTA and 2 mM MgCl2 at pH7.4. Aliquots of sample lysate from each 1 ml fraction were all used for 4% to 12% Sodium Dodecyl Sulfate Polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a PVDF membrane. Protein bands were visualized with NBT/BCIP (Sigma) after membrane incubation with primary antibody anti-CD63 antibody (1:500; Rabbit Polyclonal, Santa Cruz) and secondary antibody conjugated to alkaline phosphatase (1: 10, 000; Abcam) (Figure s4).
+ Open protocol
+ Expand
10

Characterization of BM-MSCs Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
BM-MSCs isolated extracellular vesicles were characterized by their surface tetraspanin proteins using a modified protocol [46 (link)]. Conjugated antibodies against CD9, CD63, and CD81 were used to label the extracellular vesicles. 50 μL of extracellular vesicles MicroBeads was added to the extracellular vesicles sample, vortexed and incubated for 1 h at room temperature. Following incubation extracellular vesicles bound beads were further washed in PBS/1% BSA, blocked with 10% BSA, and stained with Anti-CD9 [CD9 (Santa Cruz Biotechnology, (C-4):sc-13118) conjugated with AlexaFlour@488, Anti-CD63 Antibody (Santa Cruz Biotechnology, MX-49.129.5: sc-5275) conjugated with AlexaFlour@647, and Anti-CD81 Antibody (Santa Cruz Biotechnology, (1.3.3.22): sc-7637] conjugated with AlexaFlour@546, all in concentration 1 µg/mL. The stained sample was incubated for 1 h at room temperature then washed and resuspended in FACS buffer for further analysis using BD FACS Calibur. While negative marker used for characterizing the EVs was done by using a mitoTracker (life technologies cat# M7512,USA) which is a red-fluorescent dye that stains mitochondria.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!