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46 protocols using e cadherin

1

Immunohistochemical Analysis of Tissue Samples

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After the embedded tissue was cut into 4 μm sections and deparaffinized, the sections were treated with 3% H2O2 for 10 min to block endogenous peroxidase activity. After antigen retrieval in a microwave oven, the sections were incubated with normal goat serum at 37 °C for 10 min. Afterwards, the sections were incubated with the following primary antibodies: SMA (Affinity, Changzhou, China), HIF-1α (Affinity, Changzhou, China), E-cadherin (Affinity, Changzhou, China) and Vimentin (Affinity, Changzhou, China). After 2 h, the sections were washed and incubated with a secondary antibody (Zhongshan Biotechnology Co., Ltd., Beijing, China) at 37 °C for 30 min. After staining with 3,3′-diaminobenzidine, the tissues sections were incubated with hematoxylin staining solution for 20 s, washed with tap water for 5 min, and observed for staining intensity under a microscope. Each experiment was performed in triplicate.
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2

Western Blot Analysis of Protein Expression

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The cells and tissue specimens were lysed with radioimmunoprecipitation assay buffer (Beyotime Institute of Biotechnology, Shanghai, China) containing phenylmethanesulfonyl fluoride (Beyotime) and a protease inhibitor (CoWin Biosciences). The protein concentration was determined using a bicinchoninic acid protein assay kit (Beijing Solarbio Science and Technology Co., Ltd. Beijing, China). Each sample with equal amounts of protein were separated using 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis. After running 1–2 h under 120V, the protein was transferred onto a polyvinylidene difluoride membrane. Next, the membranes were blocked with 5% not-fat milk for 1 h at room temperature and incubated with primary antibodies c-Myc, HIF-1α, CXCR4, SDF-1, vimentin, E-cadherin, and β-actin overnight at 4°C (Affinity Biosciences). Subsequently, the membranes were washed 3 times with tris-buffered saline and Tween-20 and incubated with a horseradish peroxidase-conjugated goat anti-rabbit or anti-mouse secondary antibody (Cell Signaling Technology, Beverly, MA, USA). Finally, the membranes were treated with a chemiluminescence reagent and exposed to X-ray. The band intensities were quantified using image J software (National Institutes of Health, Bethesda, MD, USA). Relative protein expression was quantified using control protein β-actin.
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3

Molecular Profiling of Cell Cultures

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Dulbecco’s modified Eagle’s medium (DMEM), Roswell Park Memorial Institute (RPMI) 1640 medium, MEM medium, Trypsin-EDTA, and phosphate-buffered saline (PBS) buffer were purchased from M&C Gene Technology (Beijing) Ltd. TRIzol was obtained from Invitrogen (Carlsbad, CA). A reverse transcription kit was purchased from Thermo Fisher Scientific Inc. (Waltham, MA). Sohlh2 and Klotho antibodies were purchased from Abcam Inc. (Cambridge, MA). Ki67, DNMT3a, E-cadherin, ZO-1, N-cadherin, GAPDH, and Actin antibodies were bought from Affinity Biosciences Ltd.
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4

Immunoblot Analysis of Stem Cell Markers

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The protein lysates were separated on SDS-PAGE gel and then transferred to polyvinylidene difluoride (PVDF) membranes. The blots were incubated for overnight with the primary antibodies including nodal (Affinity, DF7791,1:1000), laminin (abcam, ab11575,1:5000), N-cadherin (Affinity, AF5239,1:1000), E-cadherin (Affinity, AF0131,1:1000), pERK1/2 (Affinity, AF1015,1:1000), ERK1/2(Affinity, AF0155,1:1000), pGSK3β (Affnity, AF2016,1:1000), GSK3β (Affnity, AF5016,1:1000), β-catenin(Affnity, AF6266,1:1000), β-actin (Affinity, AF7018,1:1000). After washing with TBST, goat anti-rabbit (H+L) HRP (Affinity, S0001, 1:3000) was incubated at room temperature for 2h. The membrane was visualized using the Omni-ECL™™Femto Light Chemilumcence Kit (EpiZyme, SQ201).
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5

Protein Expression Analysis by Western Blotting

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Protein extractions and western blotting were performed as described previously [30 (link)]. Primary antibodies include antibodies against Tspan5 (1 : 3000, SAB2108599, Sigma‐Aldrich, St. Louis, MO, USA), Flag‐tag (1 : 1000, F1804, Sigma‐Aldrich), E‐cadherin (1 : 1000, BF0219, Affinity Biosciences, Cincinnati, OH, USA), N‐cadherin (1 : 1000, AF4039, Affinity Biosciences), vimentin (1 : 1000, #5741, Cell Signaling Technology, Boston, MA, USA), Snail (1 : 1000, #3895, Cell Signaling Technology), ADAM10 (1 : 1000, #14194, Cell Signaling Technology), cleaved Notch1 (Val1744) (1 : 1000, #4147, Cell Signaling Technology), Hes5 (1 : 1000, ab194111, Abcam, Cambridge Biomedical Campus, Cambridge, UK) and GAPDH (1 : 5000, Bioworld Technology, Bloomington, MN, USA). GAPDH was used as a loading control to normalize the protein expression. Protein bands on the blots were visualized by ECL chemiluminescence reagent and quantified by imagej software (NIH, Bethesda, MD, USA) for densitometry analysis. Each experiment was repeated at least three times.
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6

Molecular Mechanisms of Cellular Fibrosis

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PTL (> 99%) was provided by Shangdeyaoyuan Co. (Tianjin, China). DEX sodium phosphate (> 98.5%) was purchased from Meilun Biological Technology Co. (Dalian, China), and BLM sulfate (> 91%) was obtained from Meilun Biological Technology Co. (Dalian, China). The NF-κB, Snail, β-actin, GAPDH, E-cadherin, vimentin, MMP1, α-SMA and Col-1 antibodies were purchased from Affinity Biosciences Co. (Beijing, China). The mouse TNF-α, mouse IL-4, mouse TGF-β1, and mouse interferon gamma ELISA Kits were purchased from Meilian Biological Technology Co. (Shanghai, China). Chlorine ammonia T (> 97.08%) and p-dimethylaminobenzaldehyde (> 97.08%) were obtained from (> 99.71%). Reverse-4-hydroxy-l-proline (> 99.4%) was purchased from Bailingwei Technology Co. (Beijing, China). Perchloric acid (> 70%) was obtained from Jingchun Biological Technology Co. (Shanghai, China).
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7

Protein Expression Analysis in Colorectal Cancer Cells

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We lysed CRC cells in RIPA buffer (Solarbio, Beijing, China), and determined their protein concentrations by a BCA (Bicinchoninic acid) protein quantification kit (Solarbio, Beijing, China). An amount of 100 μg of protein was separated on an 10% SDS-PAGE gel (Bio-Rad, Hercules, CA, USA) and transferred to a PVDF membrane (Bio-Rad, Hercules, CA, USA). It was then blocked with 5% BSA and incubated with primary antibodies specific for FERMT2 (ab74030, Abcam, Cambridge, UK; 1:1000), β-catenin (8480, Cell Signaling Technology, Danvers, MA, USA; 1:1000), cyclin D1 (2922, Cell Signaling Technology, Danvers, MA, USA; 1:1000), E-cadherin (AF0301, Affinity Bioscience, Jiangsu, China;1:1000), N-cadherin (ab76011, Abcam, Cambridge, UK; 1:1000), Vimentin (5741, Cell Signaling Technology, Danvers, MA, USA; 1:1000) and β-actin (Proteintech, Wuhan, China; 1:1000,), followed by incubation at room temperature for 1 h with a DyLight fluorescent dye-conjugated secondary antibody (Abbkine, Wuhan, China; 1:2000). Odyssey CLx Imaging System (LI-COR Biosciences, Lincoln, USA) detected and scanned protein signals.
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8

Protein Expression in Pancreatic Cancer Cells

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Human PC cell lines PANC-1, CFPAC-1, and Patu8988 (ATCC, Manassas, VA, USA) were grown in Dulbecco’s modified Eagle medium (DMEM; Invitrogen, Carlsbad, CA) that contained 10% fetal bovine serum and 1% penicillin–streptomycin (Sigma, Taufkirchen, Germany). Primary antibodies for NUDCD1 (Ab126902, 1:1000) and GAPDH (Ab8245, 1:2000) were obtained from Abcam. Antibodies against human Bcl-2 (12789-1-AP, 1:1000), Bax (50599-2-Ig, 1:1000) and Caspase 3 (19677-1-AP, 1:1000) were purchased from Proteintech. Antibodies against vimentin (AF7013, 1:1000), N-cadherin (AF4039, 1:1000), Cleaved-Caspase 3 (AF7022, 1:1000) and E-cadherin (AF0131, 1:1000) were purchased from Affinity Biosciences.
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9

Western Blot Analysis of Signaling Proteins

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Total proteins obtained from cells and tissues were subjected to SDS–PAGE (Biosharp, China) and then transferred to PVDF (Millipore, USA) membranes and blocked in 5% skimmed milk for 1 ​h. The membranes were incubated overnight at 4 ​°C with primary antibodies against ADCY7 (Thermo Fisher, USA), IL-1β (Affinity, China), MMP-13 (Affinity, China), N-cadherin (Affinity, China), E-cadherin (Affinity, China), vimentin (Affinity, China), α-SMA (CST, USA), p-PKA substrate (CST, USA), p-PLIN1(Abcam, USA), PLIN1 (Abcam, USA), p-HSL (CST, USA) and GAPDH. The following day, the membranes were incubated with fluorophore-conjugated secondary antibody (LI-COR Corp., NE). Protein bands were imaged with an enhanced LI-COR Odyssey infrared imaging system (LI-COR Corp., NE). The protein levels were normalized to the GAPDH levels.
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10

Immunoblotting of Inflammatory Markers

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The protein lysates were separated on SDS-PAGE gels and then transferred to PVDF membranes (Invitrogen, Waltham, United States). The membranes were blocked in 5% BSA for 1 h and incubated with following primary antibodies: TNF-α (1:1,000, Santa Cruz, California, United States), P65, IκB, and p-IκB (1:1,000, Abmart, Shanghai, China), E-cadherin (1:1,000, Affinity, Nanjing, China), SMAD4 (1:1,000, Cell Signaling Technology, Danvers, United States), α-SMA (1:1,000, Merck, Darmstadt, Germany), FN (1:1,000, Abcam, Cambridge, United Kingdom), TGF-βRII, SMAD2/3, p-SMAD2/3 (1:1,000, Elabscience, Wuhan, China), and β-actin (1:1,000, Santa Cruz, California, United States) overnight at 4°C. The membranes were then washed three times with TBST for 10 min and incubated with secondary antibody (1:5,000, ZSGB-BIO, Beijing, China). The protein bands were visualized using ECL reagents.
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