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Protease inhibitor cocktail

Manufactured by Yeasen
Sourced in China, United States

Protease inhibitor cocktail is a laboratory reagent designed to inhibit the activity of proteases, which are enzymes that can break down proteins. This product helps to preserve the integrity of protein samples during extraction, purification, and analysis procedures.

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23 protocols using protease inhibitor cocktail

1

Protein Extraction and Analysis

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The clinical tissues were homogenized with tissue homogenization treatment and centrifuged at 12000 g/min at 4°C for purification of protein. The cells were lysed with RIPA lysis buffer containing the protease inhibitor cocktail (Yeasen, Shanghai, China) on ice for 30 min. The lysis was centrifuged at 4°C for 15 min, and the supernatant was collected and subjected to BCA assay for protein concentration evaluation. A total of 30 μg protein was subjected to SDS-PAGE and transferred to the PVDF membrane. The membrane was incubated with primary antibody overnight and subjected to the second antibody at room temperature for 1 h. The antibodies are as follows: anti-RORγ (Abcam, Cambridge, USA, ab78007), anti-GAPDH (Proteintech, USA, 60004-1-Ig), anti-Myc (Santa Cruz, CA, USA, 9E10), anti-HBx (Abcam, Cambridge, USA, ab203540), and anti-β-actin (Proteintech, USA, 23660-1-AP). The enhanced chemiluminescence (ECL) system (Yeasen, Shanghai, China) was used to visualize the protein band. The Quantity One software (Bio-Rad, CA, USA) was used to quantify protein expression.
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2

Western Blot Analysis of Proteins

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Total cell lysates were prepared in RIPA lysis buffer (Beyotime Biotechnology) supplemented with 1 mM PMSF and 1× protease inhibitor cocktail (Yeasen), and nuclear protein was extracted by nuclear protein extraction kit (Solarbio) in accordance with the manufacturer’s instructions. The samples were separated by SDS-PAGE and transferred to the PVDF membrane (Millipore). The membranes were incubated with the indicated primary antibodies at 4 °C overnight and then incubated with an HRP-conjugated anti-rabbit IgG antibody (Cell Signaling, Cat# 7074, 1:5000) or anti-mouse IgG antibody (Cell Signaling, Cat# 7076, 1:5000) at room temperature for 1 h. The signal was visualized by using the NcmECL Ultra kit (New Cell & Molecular Biotech) and then was exposed by using MiniChemi (SageCreation).
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3

NEK8 and TAZ Interaction Assay

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3T3-L1 cells were transiently transfected with the NEK8 overexpression plasmid with 0, 0.5, 1, and 2 μg, and then incubated for an additional 48 hours. Then, 3T3-L1 cells were collected and lysed in RIPA lysis buffer (Yeasen, Shanghai) supplemented with protease inhibitor cocktail (Yeasen) for 30 min at 4°C, centrifuge at 8, 800 rpm for 10 min, and the supernatant was collected and divided into three 1.5 ml tube (one for input, one for IgG, and one for IP). Immunoprecipitation was conducted using antibodies against NEK8 or TAZ. Briefly, 1 μg primary antibody against NEK8 or TAZ was added to 200 μL cell lysates and incubated with rotation at 4°C for 2 h. Rabbit immunoglobulin G (IgG) was used as a negative control. Subsequently, proteins were precipitated with agarose A/G (Santa Cruz) and washed 5-6 times with RIPA lysis buffer. Immunoprecipitates and input were subjected to run SDS-PAGE, the next step same as western blot assay.
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4

Adipose Tissue Protein Extraction and Analysis

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Proteins were extracted from iWAT using a radioimmunoprecipitation assay lysis buffer (Beyotime, catalog no. P0013B) containing protease inhibitor cocktail (1:100; Yeason, catalog no. 20104ES03). Following homogenization by homogenizer and lyse on ice, lysates were centrifuged at 12,000g for 15 min at 4°C. The concentration of each sample was calculated by the Bicin-choninic Acid method, and an equal amount of protein from each sample was added an equal amount of protein loading buffer. The protein extracts were denatured by metal bath at 100°C for 10 min. Equal amounts of protein extracts were separated by 10% SDS–polyacrylamide gel electrophoresis and were transferred to PVDF membranes. The membranes were blocked for 1 hour in 5% DifcoTM Skim Milk (BD Difco, catalog no. 232100), followed by immunoblotting with the following primary antibodies: anti–α-tubulin (mouse, 1:100; Sigma-Aldrich, catalog no. T6199) and anti-UCP1 (rabbit, 1:1000; Abcam, catalog no. ab10983) at 4°C overnight. Next day, the membrane was washed three times in Tris Buffered Saline with Tween for 3 × 5 min, followed by incubation with the following secondary antibodies: horseradish peroxidase (HRP)–goat anti mouse (1:5000; Earthox, catalog no. E030110) and HRP-goat anti rabbit (1:5000; Earthox, catalog no. E030120) for 1 hour at room temperature.
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5

Flag/HA Immunoprecipitation Assay

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293T cells were collected and lysed in RIPA lysis buffer (Yeasen, Shanghai, China) supplemented with protease inhibitor Cocktail (Yeasen) for 30 min at 4 °C, centrifuged at 8800 rpm for 10 min, the supernatant was collected and divided into three 1.5 mL tube (one for input, one for IgG, and one for IP). For the immunoprecipitation assay, the cell lysate supernatants were incubated for 4 h at 4 °C with anti-Flag (Sigma) or anti-HA (Cell Signaling) coupled to the protein A/G-agarose beads (Sigma). Then, immunoprecipitated beads were washed 5–6 times with RIPA lysis buffer. Immunoprecipitates and input were subjected to run SDS-PAGE gel, and the next step was the same as the immunoblot assay.
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6

Western Blot Analysis of Synovial Proteins

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Total protein from synovial tissue/cells was collected with RIPA lysis containing Phosphatase Inhibitor Cocktail and Protease Inhibitor Cocktail (Yeasen), then ground in a homogenizer. Concentrations of protein were determined by the BCA Protein Assay Reagent Kit. 10 μg protein was separated by SDS-PAGE electrophoresis and transferred to PVDF membranes (Merck, NJ, USA). After blocking with 5% fresh nonfat milk in tris-buffered saline containing 0.05% Tween-20, the membranes were incubated with primary antibody overnight at 4 °C, followed by HRP-conjugated secondary antibody incubation. The membranes were incubated with Chemiluminescent HRP Substrate (Merck) for 1 min, then images were developed through Amersham Imager 600 (GE, MA, USA). The relative expression was quantified by ImageJ software.
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7

Western Blot Analysis of Protein Extracts

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Briefly, whole proteins were extracted with RIPA Buffer (#89900, Thermo Fisher, Waltham, USA) with protease inhibitor cocktail (#20124ES03, Yeasen, Shanghai, China). The extracts were separated by SDS-PAGE and then transferred to 0.45-μm immobilon-P transfer membrane (#IPVH00010, Millipore, Darmstadt, Germany). Membranes were blocked with 5% skim milk for 1 h at room temperature followed by incubation with a primary antibody at 4 °C overnight. Then the blots were detected with HRP conjugated secondary antibody and visualized with the Super ECL Detection Reagent ECL (#36208ES60, Yeasen).
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8

Protein Quantification and Western Blot

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Protein samples were lysed in RIPA lysis buffer (Beyotime Institute of Biotechnology) with protease inhibitor cocktail and the protein concentration was measured using the BCA kit (Shanghai Yeasen Biotechnology). The Western blot was performed as previously described using vGLUT (1:1000, Synaptic System) and GAPDH (1:4000, Kangchen) as primary antibodies.
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9

Protein Extraction and Immunoblot Analysis

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Each tested strain was incubated in yeast exact peptone dextrose (YEPD) at 25°C for 3 days, and then mycelia were harvested and washed with sterile water for protein extraction. About 100 mg of mycelia ground in liquid nitrogen was resuspended in 1 ml of extraction buffer (50 mM Tris‐HCl, pH 7.5, 100 mM NaCl, 5 mM EDTA, 1% Triton X‐100, 10 μl of protease inhibitor cocktail [Yeasen]). After homogenization with a vortex shaker, the lysate was centrifuged at 12,000 × g in a microcentrifuge for 20 min at 4°C. Fifteen microlitres of each sample was loaded onto 10% SDS‐PAGE gels. Proteins separated on gels were transferred to Immobilon‐P transfer membrane (Millipore). The monoclonal anti‐GFP antibody 300943 (Zenbio) and monoclonal anti‐Flag antibody 390002 (Zenbio) were used at a 1∶1000 dilution for immunoblot analyses. Incubation with a secondary antibody and chemiluminescent detection were performed as described previously (Yang et al., 2012 (link)).
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10

Mitochondrial Dynamics Regulation in Cell Apoptosis

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Dulbecco’s Modified Eagle’s Medium (DMEM), penicillin-streptomycin solution, 0.25% trypsin/EDTA, and phosphate-buffered saline were purchased from Gibco. Fetal bovine serum (FBS) was purchased from Biological Industries. Rabbit monoclonal anti-Mfn1(Cat#: 14739S), rabbit monoclonal anti-Mfn2(Cat#: 9482S), rabbit monoclonal anti-Opa1(Cat#: 80471S), rabbit polyclonal anti-Drp1(Phospho Ser616 Cat#: 4494S), rabbit monoclonal anti-AMPKα (Phospho Thr172 Cat#: 2535S), and rabbit monoclonal anti-β-actin(Cat#: 4970T) were purchased from Cell Signaling Technology. Rabbit monoclonal anti-Fis1(Cat#: ab156865) and rabbit monoclonal anti-DRP1(Cat#: ab184247) were purchased from Abcam. DMSO, Mito-Tracker, BCA Protein Quantification Kit, RIPA lysis buffer, protease inhibitor cocktail, phosphatase inhibitors, SDS-PAGE Gel Preparation Kit, and other Western blotting reagents were purchased from Yeasen (Shanghai, China). Annexin V-Alexa Fluor 647/PI Apoptosis Detection Kit was purchased from Fcmacs (Nanjing, China). The mitochondrial membrane potential assay kit with JC-1 was purchased from Beyotime (Nanjing, China). Unless otherwise indicated, all other chemicals and reagents were purchased from Sigma-Aldrich.
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