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8 protocols using ab108980

1

Prolyl-4-Hydroxylase Expression Evaluation

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Expression of prolyl-4-hydroxylase (PDH4) was evaluated by immunofluorescence assay (IFA) and Western blot (WB). For IFA, cells were seeded into fixed and permeated chamber-slides. Subsequently, primary antibody PDH4 (ab108980, Abcam) was incubated. Afterwards, secondary antibody (ab175471 Alexa Fluor® 568, Abcam) was incubated. Finally, images were captured with an Ism 5 beta Carl Zeiss microscope.
Total protein was obtained from the culture of sinoviocytes. Analysis of the protein content was performed by WB according to Serratos et al. [15 (link)] Normalization was performed with Beta-actin antibody from Sigma (A3854). Blots were revealed using Immobilon Western Chemiluminescent HRP Substrate (Millipore Corporation, USA). The blots were scanned with an Amersham Imager 600 RGB (GE) and densitometry was analyzed using ImageQuant TL 8.1 software.
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2

Western Blot Analysis of Metabolic Regulators

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Cells were washed thrice with ice-cold PBS and lysed in RIPA buffer for 10 min, followed by subsequent centrifugation at 12,000 rpm for 25 min at 4 °C to remove debris. Twenty micrograms total protein lysate was subjected to electrophoresis in denaturing 10% SDS-polyacrylamide gel, and then transferred to a membrane for subsequent blotting with specific antibodies. Antibodies against β-actin (Proteintech, 60008-1-lg), LDHA (Proteintech, 19987-1-AP), HK2 (Proteintech, 22029-1-AP), GLUT1 (Proteintech, 66290-1-lg), and HIF-1α (Proteintech, 20960-1-AP) were manufactured by Proteintech. Antibodies against EGLN2 (Abcam, ab108980) and TCF7L2 (Abcam, ab76151) were manufactured by Abcam.
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3

Synovial Membrane Protein Analysis

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Total protein was isolated from synovial membrane tissue samples. Analysis of its protein content was performed by Western blot as previously reported [31 (link), 32 (link)]. Prolidase, Nox2, XO, and NALP3 antibodies from Abcam (Ab108980, Ab-5826, Ab109235, and Ab51952, resp.) were used. Loading normalization was performed by anti-actin antibody (Sigma, A3854). The blots were scanned with Amersham Imager 600 RGB (GE) and densitometry analysis was performed with ImageQuant TL 8.1 Software.
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4

Immunohistochemical Analysis of TCF7L2 and EGLN2

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Immunohistochemistry for TCF7L2 and EGLN2 was performed. Briefly, paraffin sections were baked for 60 min at 70 °C, de-paraffinized in xylene, rehydrated in gradually varied alcohol, and the sections were treated with 3% H2O2 to neutralize endogenous peroxidase for 30 min. The antigen retrieval was carried out with citrate buffer (pH = 6.0) in a pressure cooker. After antigen retrieval, the sections were incubated with primary antibody and secondary antibody. TCF7L2 antibody (Abcam, ab76151) was used at a dilution of 1:100. EGLN2 antibody (Abcam, ab108980) was used at a dilution of 1:50. The sections were then stained with DAB (3,3-diaminobenzidine) and terminated in PBS, and then counterstained with haematoxylin. Based on the staining intensity of TCF7L2 in each case, the sections were scored as follows: 0, negative; 1, weak; 2, moderate; 3, strong. Two observers graded the score of staining intensity independently.
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5

Western Blot Analysis of Placental Proteins

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Total cellular protein was extracted using RIPA buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, 1 mM EDTA) supplemented with the Protease and Phosphatase Inhibitor Cocktail (Roche Applied Science). For the placenta, pieces were dissected as described for RNA preparation but were snap frozen in liquid nitrogen and stored at −80 °C. Frozen tissues were thawed for a few minutes in pre-chilled RIPA buffer (1 ml per100 mg), homogenized with a Polytron (Kinematica), and sonicated twice for 1 min (pulsed 2 s on/2 s off). After centrifugation (13 000 rpm., 15 min), 20–40 μg aliquots of protein were separated on MiniProtean TGX precast gels (Biorad) and transferred to a nitrocellulose membrane (Protran, Whatman). The membrane was blocked for 1 h at room temperature(RT) in PBS containing 0.05% tween-20 and 5% non-fat dry milk, incubated overnight at 4 °C with primary antibodies, and for 1 h at RT with an HRP-conjugated secondary antibody. Fractions were detected by Western Lightning Plus ECL (Perkin Elmer, Waltham, MA, USA). This study used primary antibodies against EPAS1/HIF2A (NB 100-122), FIH1/HIF1AN (EPR3658, NBP1-40688), TBP (NB 500-700), and MUC1 (EP1024Y, NB110-57234) from Novus Biologicals (Littleton, CO, USA). ARNT (ab2771), EGLN2 (ab108980), and MUC1 (ab101352) were purchased from Abcam (Cambridge, MA, USA).
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6

Investigating Hypoxia-Induced Kidney Cell Response

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Human renal proximal tubular cell line (HK-2 cell) was gained from American Type Culture Collection (ATCC®, CRL-2190). We obtained iohexol from GE Healthcare (Omnipaque 350), mannitol (M9546) from SigmaAldrich, MCC950 (HY-12815), roxadustat (HY-13426) and 3-MA (HY-19312) from MedChemExpress. We obtained antibodies targeting NLRP3 (15101), GAPDH (5174), and cleaved CASP3 (9664) from Cell Signal Technology; CASP1 (sc-56036), BECN1 (sc-48341), and BNIP3 (sc-56167) from Santa Cruz Biotechnology; IL1B (AF-401-NA) from R&D Systems; LC3B (L7543) from Sigma-Aldrich; HIF1A (NB100-105) from Novas Biologicals; VDAC/voltage-dependent anion channel (ab14734), LAMP1/lysosomal-associated membrane protein 1 (ab25630), EGLN2/PHD1/egl-9 family hypoxia-inducible factor 2 (ab108980) from Abcam; TUBA from (AF0001) from Beyotime. We obtained fluorescence secondary antibodies from Abcam: Donkey anti-rabbit IgG (Alexa Fluor® 555, ab150074; Alexa Fluor® 488, ab150073), donkey anti-mouse IgG (Alexa Fluor® 488, ab150105; Alexa Fluor® 555, ab150110). We obtained MitoTracker Red (M7512), and MitoTracker Green (M7514) from ThermoFisher Scientific, and LysoTracker Red (C1046) from Beyotime. The sequences of small interfering RNA (siRNA) were as follows: BNIP3 siRNA 5′- CGUUCCAGCCUCGGUUUCUAUUUAU-3′.
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7

Protein Extraction and Western Blot Analysis

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After treatments, the cells were washed with PBS and proteins were extracted in 50 μl of lysis buffer (50 mM Tris–HCl pH 7.5, 150 mM NaCl, 10% glycerol, and 1% NP-40) supplemented with 10 mM NaF, 1 mM Na3VO4, 10 μg/ml leupeptine, 1 μg/ml pepstatin and aprotinin, and 1 μl/ml PMSF saturated. Seventy micrograms of protein were boiled at 95 °C in Laemmli buffer and electrophoresed in 10% SDS/PAGE gels. Separated proteins were transferred to PVDF membranes (20 V for 30 min) and blocked in TBS solution containing 0.1% Tween 20 and 5% non-fat dry milk for 1 h at room temperature. Immunodetection of specific proteins was carried out by incubation with primary antibody against human HIF-1α (1:1000 dilution, #610,959, BD Biosciences, San Jose, CA, USA), murine HIF-1α (1:1000 dilution, #ab179483, Abcam, Cambridge, UK), PHD1 (1:1000 dilution, #ab108980, Abcam), PHD2 (1:1000 dilution, #ab109088, Abcam), PHD3 (1:1000 dilution, #ab30782, Abcam), OH-HIF-1α (1:1000 dilution, #3434S, Cell Signaling, Danvers, MA, USA), B55α (1:1000 dilution, #5689S, Cell Signaling), anti-HA (1:1000 dilution, clone 3F10 Roche), anti-Phospho-PHD2 Ser-125 (1:500) [13 (link)], and β-actin (1:10.000 dilution, #A5316, Merk, St Louis, MO, USA) overnight at 4 °C. After washing membranes, horseradish peroxidase-conjugated secondary antibody was added and detected by chemiluminescence system (GE Healthcare Europe GmbH).
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8

Western Blot Protocol for HIF-1α Analysis

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Western blot was performed as previously described [19 (link)]. Briefly, after treatments, the cells were washed with PBS and proteins extracted in 50 μL of lysis buffer (50 mM Tris–HCl (pH 7.5), 150 mM NaCl, 10% glycerol, and 1% NP-40) supplemented with 10 mM NaF, 1 mM Na3VO4, 10 μg/mL leupeptin, 1 μg/mL pepstatin and aprotinin, and 1 μL/mL PMSF saturated. Thirty micrograms of proteins were boiled at 95 °C in Laemmli buffer and electrophoresed in 10% SDS/PAGE gels. Immunodetection of specific proteins was carried out by incubation with primary antibody against HIF-1α (1:1000 dilution, #610,959, BD Biosciences, San Jose, CA, USA), OH-HIF-1α (1:1000 dilution, #3434S, Cell Signaling, Danvers, MA, USA), B55α (1:1000 dilution, #5689S, Cell Signaling), anti-HA (1:1000 dilution, #clone 3F10 Roche), anti-Phospho-PHD2 Ser125 (1:500 dilution) [10 (link)], anti-PHD1 (1:1000 dilution, #ab108980, Abcam), anti-PHD2 (1:1000 dilution, #ab109088, Abcam), PHD3 (1:1000 dilution, #ab30782, Abcam) and β-actin (1:10.000 dilution, #ab49900, Abcam, Cambridge, UK), overnight at 4 °C. After washing membranes, horseradish peroxidase-conjugated secondary antibody was added and detected by chemiluminescence system (GE Healthcare Europe GmbH).
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