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6 protocols using 2 deoxy d glucose

1

Metabolic Profile of Myoblast Transfectants

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Myoblasts were transfected with empty vector or NT-FT-SMTNL1 and were seeded at a density of 10 000 cells per well in collagen-coated XF96 microplates (Agilent Technologies; Santa Clara, CA, USA). Following a 72-hour T3 treatment of cells, 180 µl of assay media (Agilent Technologies; Santa Clara, CA, USA) containing 1000 mg/L glucose was added. Myoblasts were incubated for 1 hour in a non-CO2 incubator along with the previously hydrated sensor cartridge (Agilent Technologies; Santa Clara, CA, USA) loaded with the following inhibitors: 50 µM etomoxir (carnitine palmitoyltransferase-1 inhibitor); 2 µM oligomycin (ATP synthase inhibitor); 4 µM FCCP (carbonyl cyanide-p-trifluoromethoxyphenylhydrazone; mitochondrial oxidative phosphorylation uncoupler), or 10 µM antimycin (mitochondrial electron transport chain complex III inhibitor) + 100 mM 2-deoxy-D-glucose (glycolysis inhibitor). Five measurement points were taken for the baseline and after each injection. Finally, cells were solubilized in 1 N NaOH and total protein concentration was measured using a Bicinchoninic acid (BCA) assay kit (Thermo Fisher Scientific; Waltham, MA, USA).
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2

Extracellular Acidification Rate Measurement

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To measure the extracellular acidification rate (ECAR), we used a Seahorse extracellular flux (XF96) analyzer. In all, a total of 2 × 104 cells were cultured in XF96 Cell Culture Microplate pre-coated with Matrigel in mES medium before 24 h from the assay. After a medium change to XF base media supplemented l-glutamine (4 mM, Gibco, 25030–081), the assay was performed using XF96 Extracellular Flux Analyzers (Seahorse Bioscience, North Billerica, MA, USA). Four measurements were obtained under basal conditions and after the addition of several chemicals such as d-glucose (10 mM), oligomycin (1 μM), and 2-Deoxy-d-glucose (50 mM) (Agilent Technologies, 103020–100). The process after treatment was performed according to the manufacturer's instructions.
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3

Extracellular Acidification Rate Measurement

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To measure the extracellular acidification rate (ECAR), we used a Seahorse extracellular flux (XF96) analyzer. In all, a total of 1.5 × 104 ESCs, XEN cells, and TSCs were cultured in XF96 Cell Culture Microplate pre-coated with Matrigel in mES, XEN, TSC medium, respectively, 24 h prior to the assay. After a medium change to XF base media supplemented l-glutamine (4 mM, Gibco, 25030-081), the assay was performed using XF96 Extracellular Flux Analyzers (Seahorse Bioscience, North Billerica, MA, USA). Four measurements were obtained under basal conditions and after the addition of several chemicals such as d-glucose (10 mM), oligomycin (1 μM), and 2-Deoxy-d-glucose (50 mM) (Agilent Technologies, 103020-100). The process after treatment was performed according to the manufacturer's instructions.
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4

Influence of P4 on Glycolysis in BM-MNCs

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To examine the influence of P4 on training, BM-MNCs were plated at 1×105 cells/well of an XFe96-well cell culture plate (Agilent Technologies, Santa Clara, CA, USA) and trained in csFBS media supplemented with negative control volume or 20 ng/mL P4 (Sigma Aldrich). After 6 days, cells were washed and left in glycolysis stress test buffer (Agilent XF DMEM media, supplemented with 2 mM glutamine, pH 7.4) at 37°C with no CO2 for at least 1 h. Afterward, glycolytic activity by means of extracellular acidification rate (mpH/min, or the accumulation of protons per minute) of the supernatant was analyzed with an Agilent Seahorse XFe96 analyzer. Measurement of three time points each of stable non-glycolytic acidification, followed by the addition of 10 mM glucose to each well to measure basal glycolysis; addition of 2 μM oligomycin, an ATP synthase (complex V) inhibitor to induce maximum glycolytic capacity; and finally addition of 50 mM 2-deoxy-D-glucose to inhibit glycolysis was performed according to the manufacturer’s instructions (Agilent Technologies, Santa Clara, CA, USA). These experiments were performed on both female and male cells.
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5

T-cell Bioenergetics Analysis by Seahorse

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Real time bioenergetics analysis of extracellular acidification rates (ECAR) and oxygen consumption rates (OCR) of T-cells subjected to antibody stimulation was performed using the XF analyzer (Seahorse Biosciences). T-cells were cultured in serum free, unbuffered XF assay medium (Seahorse biosciences, Cat 102365-100) for 1 h. The cells were then seeded (6 × 105/well) into the seahorse XF24 cell plates for analysis. Perturbation profiling of the use of metabolic pathways by T-cells was achieved by the addition of oligomycin (1 μM), FCCP (1 μM), Antimycin A (1 μM), rotenone (1 μM), D-glucose (10 mM), 2-deoxy-D-glucose (2DG, 50 mM; all from Seahorse biosciences, Cat# 103020-100 and 103015-100). Experiments with the Seahorse system were done with the following assay conditions: 2 min mixture; 2 min wait; and 4–5 min measurement. Metabolic parameters were calculated by Wave v2.4.1 Software. Experiments were done in at least triplicate wells.
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6

Glycolytic Profiling with Seahorse XF

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To assess glycolytic function, we used an Agilent Seahorse XF Glycolysis Stress Test Kit (Seahorse Bioscience, #16814032, North Billerica, MA, USA) with a Seahorse XFe96 Analyzer to directly measure the real time extracellular acidification rate (ECAR). Before measurement, the sensor cartridge was hydrated in Seahorse XF Calibrant at 37 °C in a non-CO2 incubator overnight. NGP, BE2 and NIH3T3 cells were seeded onto 6-well plates with different doses of DMAMCL, incubated for 24 h, and then the cells were collected, washed twice with cold PBS, and resuspended with phenol red-free assay solution. To avoid the impact of the different number of cells in each group on ECAR, we counted and seeded the same number of cells for each group onto the XF96 cell culture microplates (Seahorse Bioscience, North Billerica, MA, USA) precoated with Cell-Tak solution at the density of 4 × 104 cells/well (NGP) and 3.5 × 104 cells/well (BE2, NIH3T3). The cell culture microplates were centrifuged at 1000 rpm for 5 min to attach the cells and then glucose, oligomycin (ATP synthase inhibitors), and 2-deoxy-d-glucose (2-DG, hexokinase inhibitor) were added according to the manufacturer’s instructions (Seahorse Bioscience) and detected immediately.
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