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Pires2 egfp

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PIRES2-EGFP is a fluorescent protein-based reporter construct. It consists of the PIRES2 internal ribosome entry site (IRES) sequence coupled to the enhanced green fluorescent protein (EGFP) gene. This allows for the expression of EGFP under the control of the PIRES2 IRES.

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7 protocols using pires2 egfp

1

Cloning and Characterization of SIGMAR1 Variants

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Whole wild-type and mutant SIGMAR1-ORFs were distinctively amplified, with the use of appropriate restriction sites containing primers (online supplementary table S1), from cDNAs of a homozygous healthy individual and a patient with HMNJ, respectively and cloned into pEGFP-C3 (BD, California, USA) and pFLAG-CMV-2 (Sigma-Aldrich, Missouri, USA) vectors. With the employment of a Flag-tag containing forward primer and an appropriate reverse primer, Flag-tagged SIGMAR1 whole-ORFs were cloned from pFLAG-CMV-2 to the bicistronic vector pIRES2-EGFP (BD). All of the plasmid constructs were sequenced and verified to be free of any nucleotide changes in the SIGMAR1 cDNA.
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2

Generation of mPRα Overexpression and Knockdown Cell Lines

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The full-length cDNA of mPRα was amplified using the following primers: 5′-CATGGCGACGGTGGTGATG-3′ (forward) and 5′-GGCAGCAGAAGAAATAGGCG-3′ (reverse), and then subcloned into the vector, pIRES2-EGFP (BD Biosciences Clontech). The sequence for the construction of mPRα-shRNA was sense, 5′-GGAGCTGTAAGGTCTTCTTTA-3′; and antisense, 5′-TAAAGAAGACCTTACAGCTCC-3′, and then subcloned into the vector, pSUPER (GenerayBiotech Co., Ltd., Shanghai, China). Sequence fidelity and reading frame accuracy of the mPRα expression or mPRα-shRNA plasmid were achieved by DNA sequencing analysis. The MB231 or MB231br cells were transfected using Lipofectamine® 3000 (Thermo Fisher Scientific, Inc., Waltham, MA, USA) with the mPRα expression plasmid or mPRα-shRNA plasmid, respectively. The pIRES2-EGFP vector or pSUPER vector was also transfected into the MB231 or MB231br cells which served as controls. The transfected cells were then cultured in medium supplemented with G418 (Promega, Madison, WI, USA) or puromycin (InvivoGen, San Diego, CA, USA) for the establishment of stably transfected cell clones.
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3

Automated Patch Clamp of KCNQ2/3 Channels

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Methods for expression and recording in CHO cells were previously described in detail (Vanoye et al., 2022 (link)). Human KCNQ2 cDNA (GenBank accession number NM_172108) in pIRES2-EGFP (BD Biosciences-Clontech, Mountain View, CA, USA) was used as template for in vitro mutagenesis. A stable line expressing human KCNQ3 (GenBank accession number NM_004519) was generated as described and maintained under dual selection with Zeocin (100 μg/ml) and hygromycin B (600 μg/ml). Plasmids with WT KCNQ2 or G256W cDNA were introduced into the KCNQ3-expressing CHO cell stable line by electroporation (Maxcyte STX; MaxCyte Inc., Gaithersburg, MD, USA). Automated patch clamp recording was performed using the Syncropatch 768 PE platform using PatchController384 V.1.3.0 software (Nanion Technologies, Munich, Germany). Pulse protocols were performed before and after addition of ezogabine (10 μM, Sigma-Aldrich) and, subsequently, XE-991 (25 μM, Abcam, Cambridge, MA; or TOCRIS, Minneapolis, MN). Currents reported are XE-991-sensitive currents, calculated by subtraction.
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4

Plasmid Construction for Transcription Factor Analysis

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Expression plasmid pcDNA3.1-Mef2c and 3× MEF2-luciferase reporter construct, which contain three upstream tandem repeats of a MEF2 binding site sequence from the desmin gene, were kindly provided by Eric N. Olson.
The Suv39h1 gene was amplified using SF1-SF3 primers (Table 1). Then, the recombinant plasmids were separately digested with Xho I and EcoR I or Sal I and Not I, and ligated into the pIRES2-EGFP (BD Biosciences Clontech, Franklin Lakes, NJ, USA), pCMV-Myc (BD Biosciences Clontech), and pBIND vectors (Promega, Madison, WI, USA), separately.
The Mef2c gene was amplified using MF1 primers (Table 1) designed according to the Sus scrofa Mef2c gene (accession number: NM001044540). Then, the recombinant plasmids were digested with Sal I and Not I, and ligated into the pCMV-HA (BD Biosciences Clontech), and pACT vectors (Promega), separately.
The HP1α gene was amplified using HF1-HF3 primers (Table 1). Then, the recombinant plasmids were digested with Nhe I and Xho I, and EcoR I and Xho I, or Sal I and Not I, and ligated into the pIRES2-EGFP, pCMV-HA, and pBIND vectors, respectively.
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5

Lentiviral Overexpression of hTERT

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The overexpression hTERT plasmid was packaged into lentiviral particles. hTERT Plasmid (pGRN145, a kind gift from Dr Kevin Kaster, Geron Inc., USA) contained 3.45-kb cDNA between the two EcoRI restriction endo-nuclease sites and was 14-kb long. pIRES2-EGFP purchased from BD Biosciences (Clontech, USA). The hTERT fragment was digested from pGRN145 with EcoRI and ligated into the site of EcoRI of pIRES2-EGFP. The orientation of recombinant DNA was further confirmed by NotI restriction endonuclease. The pIRES2-EGFP as a blank control. The TCF/LEF reporter kit was purchased from SABiosciences (Valencia, CA, USA). To determine the effect of hTERT on TCF/LEF reporter activity, we transfected hTERT-overexpressing or ZEB1 depleted cells with TCF/LEF reporter plasmids. E-cadherin promoters and ZEB1 and β-catenin shRNA plasmids used in this study were designed and synthesized by Guangzhou RiboBio Company (RiboBio, Guangzhou, China).
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6

Subcellular Localization and Ligand Binding of BlTLR

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To study the subcellular localization of BlTLR in HEK293 cell, the coding sequence was cloned into pIRES2-EGFP vector (BD Biosciences Clontech, 6029-1) with two HA-tags (YPYDVPDYA) at 3′ end (named BlTLRHA) using XhoI and EcoRI as restriction sites. For testing the specific ligand binding of BlTLR, the ectodomain and transmembrane domain (amino acids 1-774) of BlTLR fused with human TLR2 cytoplasmic region (amino acids 611-784; NCBI: NP_001305716.1) was cloned into pIRES2-EGFP vector (named chimeric BlTLR) between SacII and EcoRI restriction sites. The eukaryotic expression vector pIRES2-EGFP was purchased from BD Biosciences. The NF-κB-dependent luciferase reporter vector (pNFκB) and the Renilla luciferase vector (pRenilla) were provided by Dr. José Miguel Lizcano. All the plasmids were confirmed by sequencing and agarose gel electrophoresis digested with the corresponding restriction enzymes. All the plasmids were purified at large scale using NucleoBond Maxi endotoxin-free plasmid isolation kit (Fisher Scientific) and stored at −20°C until use.
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7

Engineering KCNH2-R62Q Mutation in HERG

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The KCNH2-R62Q mutation was engineered in a recombinant HERG cDNA using PCR sitedirected mutagenesis (primer sequences available on request). The final construct was assembled in a mammalian expression plasmid (pIRES2-EGFP, BD Biosciences-Clontech, Mountain View, CA, USA) in tandem with an internal ribosome entry sequence (IRES) and the coding sequence of enhanced green fluorescent protein (EGFP) for use as an indicator of successful transfection. All constructs were fully sequenced to verify the mutation and to exclude polymerase errors.
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