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34 protocols using araldite

1

Ultrastructural Analysis of Vessel Dynamics

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For electron microscopy, mice were perfused with heparinized Ringer’s solution and with freshly prepared PFA and glutaraldehyde (2.5% glutaraldehyde and 2% PFA in PBS). Until further processing, brains were postfixed in Monti-Graziadei solution (2% glutaraldehyde, 0.6% PFA, 0.03% calcium chloride in 0.06 M sodium cacodylate buffer, pH 7.35) for at least 48 hours at 4 °C. After further fixation in 1% osmium tetroxide in 0.1 M cacodylate buffer for 2 h, samples (approximately 1 mm3) were dehydrated in an ascending series of ethanol and incubated in propylene oxide followed by a 1:1 mixture of propylene oxide and araldite (Sigma-Aldrich) and subsequently embedded in araldite. Ultrathin sections were cut at approximately 80 nm and were transferred to copper grids. Sections were contrasted in a contrasting system for ultrathin sections using uranyl acetate ready-to-use solution, followed by lead citrate ready-to-use-solution (all Leica Microsystems). Images of vessels smaller than 10 μm were taken by an electron microscope (Jeol JEM 1011). After putting images of a vessel into a collage by using Inkscape 1.0.1 [RRID: SCR_014479], vesicles in the range of 30 - 200 nm were manually counted from 3 capillaries per animal and luminal membrane length was measured by using ImageJ.
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2

Ultrastructural Analysis of Brain Vessels

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For electron microscopy, mice were perfused with heparinized Ringer’s solution and with freshly prepared PFA and glutaraldehyde (2.5% glutaraldehyde and 2% PFA in PBS). Until further processing, brains were postfixed in Monti-Graziadei solution (2% glutaraldehyde, 0.6% PFA, 0.03% calcium chloride in 0.06 M sodium cacodylate buffer, pH 7.35) for at least 48 h at 4 °C. After further fixation in 1% osmium tetroxide in 0.1 M cacodylate buffer for 2 h, samples (approximately 1 mm3) were dehydrated in an ascending series of ethanol and incubated in propylene oxide followed by a 1:1 mixture of propylene oxide and araldite (Sigma-Aldrich) and subsequently embedded in araldite. Ultrathin sections were cut at approximately 80 nm and were transferred to copper grids. Sections were contrasted in a contrasting system for ultrathin sections using uranyl acetate ready-to-use solution, followed by lead citrate ready-to-use solution (all Leica Microsystems). Images of vessels smaller than 10 µm were taken by an electron microscope (Jeol JEM 1011). After putting images of a vessel into a collage by using Inkscape 1.0.1 (RRID: SCR_014479), vesicles in the range of 30–200 nm were manually counted from three capillaries for each animal, and luminal membrane length was measured using ImageJ.
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3

Histological Preparation of Insect Galls

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Galls were rinsed twice for 10 min in sodium phosphate buffer (10 mM; pH 7) and fixed overnight in 3% glutaraldehyde. Dehydration of the galls was carried out in three steps of 15 min in increasing concentrations of ethanol (30, 50 and 70%), two steps of 1 h in 90% ethanol, three steps of 1 h in 100% ethanol and, finally, two steps of 15 min in 100% acetone. Subsequently, galls were embedded in Araldite (Sigma-Aldrich) following several steps of incubation in an Araldite : acetone solution: 2 h in a 1 : 3 solution, overnight incubation in a 1 : 1 solution and three steps of 1 h in a 3 : 1 solution. Finally, the galls were oriented longitudinally in silicone molds filled with 100% Araldite and maintained at 60°C for 48 h for the polymerization of the Araldite. All steps were performed at 4°C.
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4

Characterization of AuNPs Delivery

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Random lung samples, harvested at one day post-injection, were used to confirm AuNPs delivery.25 (link) Tissue specimens were fixed in 2.5% glutaraldehyde for 1 h followed by post-fixation with 1% osmium tetroxide and potassium ferrocyanide (Sigma) for 1 h at room temperature. The samples were then dehydrated in an ascending series of ethanol before they were embedded in araldite (Sigma). Ultrathin sections were cut and mounted on Formvar-coated copper grids where they were doubly stained with uranyl acetate (BDH) and lead citrate (BDH) and viewed under a JEOL transmission electron microscope (JEM-1230, Japan), the most common method for AuNPs visualization.2 (link) Elemental analysis was performed using the JEOL EDX (Energy Dispersive X-ray) microanalysis unit coupled with a JEM-1230 electron microscope.
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5

Ultrastructural Analysis of Cells

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TEM was conducted as previously described [56 (link)]. Cells were seeded in 60 mm Petri dishes and then treated as described for growth experiments for 72 h. Cells were fixed in 3% glutaraldehyde (Sigma-Aldrich, Merck) solution in 0.1 M phosphate buffer (pH 7.4). Then the samples were post-fixed in osmium tetroxide (3%), dehydrated in graded acetone, and embedded in Araldite (Sigma-Aldrich, Merck). Ultrathin sections were collected on copper grids and contrasted using both lead citrate and uranyl acetate. Grids were examined in a Zeiss EM 10 electron microscope (ZEISS, Oberkochen, Germany).
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6

Ultrastructural Analysis of Cells

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Cells were seeded on Lab-Tek chamber slides (Nunc), washed and fixed with 3% glutaraldehyde. Then, they were post-fixed in 1% osmium tetroxide for 1 h, rinsed, dehydrated, incubated for 2 h with 2% of uranyl acetate and embedded in Araldite (Sigma-Aldrich). Ultrathin sections were cut, stained with lead citrate, and examined under a Philips CM10 transmission electron microscope.
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7

Transmission Electron Microscopy of Cells

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Transmission Electron Microscopy was conducted as previously described [9 (link)]. Briefly, cells treated as indicated were fixed in 3% glutaraldehyde (Sigma-Aldrich, Milan-Italy) solution in 0.1 M phosphate buffer (pH. 7.4) for 2h. Then the samples were post-fixed in osmium tetroxide (3%), dehydrated in graded acetone, and embedded in Araldite (Sigma-Aldrich, Milan-Italy). Ultrathin sections were collected on copper grids and contrasted using both lead citrate and uranyl acetate. The grids were examined in a “Zeiss EM 10” electron microscope.
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8

Ultrastructural Analysis of Heart Tissue

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Small blocks of heart were fixed in 3 % glutaraldehyde (Acros Organics, Thermo Fisher Scientific, Waltham, MA, USA) in Sorensen phosphate buffer (0.1 M; pH 7.4) overnight at 4 °C, post-fixed with 1 % osmium tetroxide in 0.1 M Sorensen phosphate buffer for 30 min, dehydrated, and embedded in Araldite (Fluka-Sigma Aldrich). Semi-thin sections, 2-μm thick, were stained with toluidine blue. For electron microscopy, ultrathin sections (200 nm) were obtained with an Ultracut ultramicrotome (Reichert-Jung, Leica, Microsystems GmbH, Wetzlar, Germany), stained with uranyl acetate and lead citrate, and observed with a JEM 1010 transmission electron microscope (Jeol, Tokyo, Japan).
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9

TEM Specimen Preparation and Imaging

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For transmission electron microscopy (TEM) specimens were fixed with 2.5% glutaraldehyde and post-fixed with 1% OsO4. Specimens were embedded in Araldite (Sigma-Aldrich). Ultrathin sections (60–80 nm) were cut with an Ultramicrotome PowerTome XL, equipped with a Drukkert 45° diamond knife, and contrasted with uranyl acetate. Ultrathin sections were studied under a Zeiss-1000 (Carl Zeiss) transmission electron microscope. The images were processed using ImageJ software (FiJi).
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10

Morphological Changes of THP-1 Cells under Lactobacilli

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Changes in the morphology of the THP-1 cells following stimulation with lactobacilli were observed under a light microscope (Nikon, Tokyo, Japan). Selected lactobacilli and THP-1 cells, treated and untreated as indicated, were sequentially fixed with 2.5% glutaraldehyde and 1% osmium tetroxide (OsO4) in 0.1 M cacodylate buffer (pH 7.4). After dehydration with graded ethanol, cells were embedded in araldite (Sigma-Aldrich, Gallen, Switzerland) and sectioned. Ultrathin sections (4 μm) were counterstained with uranyl acetate and lead citrate and examined with a Leica electron microscope (Leica, Solms, Germany).
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