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Dmi3000 inverted microscope

Manufactured by Leica

The DMI3000 is an inverted microscope designed for laboratory use. It features a sturdy and stable construction, electronic focusing, and an ergonomic design. The DMI3000 provides high-quality optical performance and is suitable for a variety of microscopy techniques.

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9 protocols using dmi3000 inverted microscope

1

Super-Resolution Imaging Protocol with Oxygen Scavenging

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Prepared cells were imaged in the presence of an SR imaging buffer comprising an oxygen scavenging system (1 mg/mL glucose oxidase [Sigma-Aldrich; G2133], 0.02 mg/mL catalase [Sigma-Aldrich; C3155], and 10% glucose [Sigma-Aldrich; G8270] in phosphate-buffered saline) and 100 mM mercaptoethylamine (Fisher Scientific; BP2664100) (76 (link)). As described previously, all images were acquired on a custom-built SR microscope based on a Leica DMI 3000 inverted microscope (77 (link)) with 200 frames collected at 33 Hz for each color channel. Multicolor channels were corrected using a polynomial morph-type mapping algorithm before and a table of molecular localizations generated using the ImageJ (78 (link)) plugin QuickPALM (79 (link)). Rendered multicolor SR images were analyzed using three complementary approaches as detailed in Fig. 1 CE and further discussed in SI Appendix, Methods. N values are in SI Appendix, Tables S1 and S2.
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2

Pancreatic Cancer Organoid Generation

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Previously published protocols for the generation of pancreatic cancer organoids were followed (80 (link)). Organoid images were obtained using a DMI3000 inverted microscope from Leica at ×10 magnification. Diameter quantification was done with ImageJ (NIH).
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3

Cellular Uptake of FITC-dBSA-Au@Cu2S Nanoparticles

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MCF-7 Breast cancer cells (American Type Culture Collection) were cultured with Dulbecco’s Modified Eagle’s Medium (DMEM, Hyclone), supplemented with 10% fetal bovine serum (FBS, Hyclone), penicillin (100 µg ml−1, Gibco) and streptomycin (100 µg ml−1, Gibco) in a humidified environment (37 °C, 5% CO2). Before treating with QDs, cells were seeded onto cover glasses in a 6-well plate with DMEM medium. The prepared FITC-dBSA-Au@Cu2S formulations were then diluted with PBS buffer (pH = 7.2) solution to a concentration of 500 μg/mL. Next, the cells were treated with the QD formulations for 4 h. After 4 h of incubation, the treated cells were washed with PBS buffer for three times. Leica DMI3000 inverted Microscope with a 10 × lens was used for cell imaging study, and the excitation wavelength is 477 nm, the emission wavelength is 530 nm.
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4

Oocyte Ultrastructural Analysis

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To view overall structure, a subset of oocytes was fixed for 3 days in 3% glutaraldehyde in 0.1 M phosphate buffer, post-fixed for 1h with 1% OsO4 in 0.1 M phosphate buffer, dehydrated in ascending ethanol series, and embedded in Spurr’s resin. Sections (1 μm) were cut with a Leica EM UC6 ultramicrotome, then mounted and stained with methylene blue and toluidine blue. All light microscopy was conducted using a Leica DMI3000 inverted microscope.
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5

Optical Characterization of Anisotropic Microparticles

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As the trans-azoTAB:PAA microparticles tended to wet the surface of untreated glass coverslips, poly(ethylene glycol) (PEG)-functionalized glass substrates were used for optical microscopy imaging. Optical microscopy was performed on a Leica DMI3000 inverted microscope using a ×63 oil immersion lens, 1.4 NA. Polarized light images were acquired on the same microscope equipped with polarisers. Approximately 2.5 μL of the microparticle suspension were mounted into PEG-functionalized capillary glass slides and observed after 5 minutes of equilibration time. Images of the microparticles were recorded on fields of view containing groups of 20–100 particles. Two to three fields of view were recorded for each experiment. Experiments were repeated at least three times. Images were analysed using ImageJ. The circularity (Ψ) of the particles was estimated from Ψ = dmin/dmax where dmin and dmax are the perimeters of the minimum and maximum circumscribed circles associated with each particle48 .
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6

Breast Cancer Cell Imaging with QD and GNR Nanoparticles

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MCF-7 breast cancer cells (American Type Culture Collection) were cultured with Dulbecco’s Modified Eagle’s Medium (DMEM, Hyclone), supplemented with 10% fetal bovine serum (FBS, Hyclone), penicillin (100 µg mL−1, Gibco), and streptomycin (100 µg mL−1, Gibco) in a humidified environment (37 °C, 5% CO2). Before treating with nanoparticles, the cells were seeded onto cover glass in a six-well plate with DMEM. The prepared CdSe/ZnS@FA QDs and GNR@CdSe/ZnS@FA nanoparticles were then diluted with PBS buffer (pH 7.2) solution to a concentration of 500 μg/mL. Next, the cells were treated with the CdSe/ZnS@FA QDs and GNR@CdSe/ZnS@FA nanoparticles for 4 h. After 4 h of incubation, the treated cells were washed with PBS buffer three times. A Leica DMI 3000 inverted microscope with a 10× lens was used for the cell imaging study, and the excitation and emission wavelengths were 532 nm and 630 nm, respectively.
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7

3D Culture of Cancer and Endothelial Cells

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KRC and SVEC4–10 cells were cultured in 3D as described [32 (link)]. Briefly, KRC PCCs were transduced with an eGFP lentiviral construct (Clontech), and SVEC4–10 ECs were labeled using the PKH26 red fluorescent cell linker kit per the manufacturer's recommendations (Sigma-Aldrich). 3,000 PCCs or 6,000 ECs were cultured alone or together in 3% matrigel. Two days after plating, and every two days thereafter, cells were treated with control media, or media with ruxolitinib [100 nM]. The final concentration of DMSO in all experiments was 0.05%. Images were acquired with a Leica DMI3000 inverted microscope outfitted with a DFC300 FX camera. Fluorescence intensity was determined on three independent experiments plated in duplicate using Image Pro Plus v.7 (Media Cybernetics).
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8

Scratch Wound Healing Assay

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Scratch wound-healing assays were performed in 24-well tissue culture plates. The cells were seeded at a density of 1X105 cells/well. Scratches were made using 1 mL sterile pipette tips and the wells were washed twice with medium. Cells were allowed to grow for additional 24 h or 48 h in the presence or absence of grifolin. Images were taken under a Leica DMI3000 inverted microscope. Gap distance of the wound (μm) was measured using LAS V3.8 software. The alteration of cell migrated distance was calculated using the formula of (B-A), Where, A denotes the gap distance at 24 h or 48 h, and B for gap width at 0 h.
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9

Microscopic Examination of Ovariole Patency

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To examine patency, freshly dissected ovarioles were stained with 1% Evans Blue and processed as described in Pascual et al. [43] . To view overall structure, a subset of oocytes were fixed for 3d in 3% glutaraldehyde in 0.1 M phosphate buffer, post fixed for 1 hour with 1% OsO4 in 0.1 M phosphate buffer, dehydrated in an ascending ethanol series, and embedded in Spurr's resin. Sections (1 µm) were cut with a Leica EM UC6 ultramicrotome, then mounted and stained with methylene blue and toluidine blue. All light microscopy was performed using a Leica DMI3000 inverted microscope.
For fluorescence imaging, ovarioles were fixed and stained with phalloidin–TRITC (cytoskeleton; Sigma) and DAPI (nuclei; Sigma) as per Cruz et al. [44] (link), then examined with a Leica TCS SP8 confocal microscope.
Transverse 100 nm ultrathin sections were taken near the midpoint between the anterior and posterior ends of the basal oocytes embedded in Spurr's resin above. Ultrathin sections were mounted and stained according to [45] (link) and follicle cell ultrastructure was then imaged using a Hitachi HT-7700 transmission electron microscope and AMT Image Capture Engine Software. All images were post processed in Adobe Photoshop.
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