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5 protocols using anti igg antibodies

1

RNA Immunoprecipitation of AGO2 in GC-MSCs

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Anti-Argonaute 2 (AGO2) (cat. no. C34C6, Cell Signaling Technology, Inc.) and anti-IgG antibodies (cat. no. 8726S Cell Signaling Technology, Inc.) were incubated with protein A+G beads at 4°C for 1 h following the instructions provided with the RNA Immunoprecipitation kit (cat. no. P0101, Geneseed Biotech Co., Ltd.). Briefly, 1 ml Buffer A working solution contained 1% volume protease inhibitor and 1% volume RNase inhibitor before use. A total of 1×107 GC-MSCs cells were used for each IP reaction and added 1 ml of the configured RIP lysis buffer. The lysate was centrifuged at 14,000 × g for 10 min, at 4°C. The resulting supernatant and antibody-attached magnetic beads were incubated for 1 h at 4°C. The product was obtained by centrifugation at 12,000 × g for 1 min at 4°C. The captured RNAs and target protein were finally eluted and purified for RT-qPCR and western blot analyses.
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2

ChIP Assay for A20 Gene Regulation

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SK-N-AS cells (3 × 106) were plated in 10-cm2 dishes and incubated at 37 °C for 48 h. Dishes were incubated at the appropriate temperature 1 h before treatment with 10 ng TNFα. ChIP assays were performed as described previously (3 (link)) based on the protocol by Upstate Biotechnology. Immunoprecipitation was carried out using 5 μg of either Anti-RNA polymerase II (Merck 05-623) or Anti-IgG antibodies (Cell Signaling #2729s). DNA was extracted and amplified by PCR as described previously (3 (link)). The following primer sequences were used: A20 gene forward GGTGTTGGAGAGCACAATGG, reverse CAGTGTGTATCGGTGCATGG, amplifying 160 bp of DNA. The qPCR was performed using LightCycler 480 SYBR Green 1 Master Mix (Roche).
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3

Orexin A Modulation of BMP-4 Signaling

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PC12 cells (3 × 105 cells/mL) were pretreated with orexin A (300 nM) in DMEM containing no serum and 1% PS for 48 h. After a 1 h stimulation with BMP-4 (3 ng/mL), the cells were solubilized via a sonicator in a 100 μL RIPA lysis buffer (Upstate Biotechnology, Lake Placid, NY, USA) containing 1 mM of Na3VO4, 1 mM of NaF, 2% SDS and 4% β-mercaptoethanol as reported previously [19 (link)]. The samples were then subjected to SDS-PAGE/immunoblotting analysis with primary antibodies, anti-phospho-Smad1/5/9 (pSmad1/5/9) antibodies (13,820, Cell Signaling Technology, Inc., Beverly, MA, USA) and anti-total-Smad1 (tSmad1) antibodies (9743, Cell Signaling Technology, Inc.), at 1:500 dilution and then with anti-IgG antibodies (7074, Cell Signaling Technology, Inc.) at 1:104 dilution. The integrated band intensities were measured using the C-DiGit® Blot Scanner System (LI-COR Biosciences, Lincoln, NE, USA). Phospho-Smad1/5/9 levels were evaluated using the ratios of the signal intensities of phospho-Smad1/5/9/total-Smad1.
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4

ChIP Assay for Transcription Factor Binding

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ChIP was executed with the ChIP assay kit (Beyotime) using the Smad 4 antibody, Smad 4, and anti-IgG antibodies (Cell Signaling Technology). The ChIP DNA was extracted with the DNA Purification Kit (Beyotime) and the samples were then subjected to qPCR amplification with primers spanning the protein-binding sites. The primers used were for miR-26a (F: 5′-GAGGCCTGATGGAGCCGTGGGGACC-3′, R: 5′-AGAG CCACAGCAGGCGGAAAGCCAGATGCCACAGG-3′), miR-375 (F: 5′-TTTCCTAGAACTGCTGTCTTGTCCCATCGCC CACA-3′, R: 5′-AAGAACCCACCCTTTCCTCATCAGAACCAC TTTGC-3′), and Ngn3 (F: 5′-TTAGGCTTTGGATTCTTCATAG TTCTGATAGGATTTGC-3′, R: 5′-AAGTGTCTTCTGGTCCC AGGAATGGAGGCGTAAGG-3′).
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5

RIP Assay for ELAVL1 mRNA Targets

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RIP assays were performed by using the Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Millipore, USA) according to the manufacturer’s instructions. Briefly, cells were lysed in lysis buffer and the cleared lysates were immunoprecipitated with the indicated anti-ELAVL1 and anti-IgG antibodies (Cell Signaling Technology). Immunoprecipitated and input RNA was isolated and reverse transcribed for qRT-PCR amplifications with PTEN 3′-UTR-specific primers. mRNA relative expression level was normalized to input mRNA expression. The primers used for amplification are listed in Supplementary Table 1.
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