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4 protocols using anti iba1 antibody

1

Immunofluorescence Staining of Brain Sections

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Brain sections were processed for immunofluorescence staining as previously described [46 (link)] and reported below. In brief, all sections were incubated overnight (O/N) in a humidified chamber at 37 °C using the following primary antibodies: anti-GFAP antibody (1:100; sc-33673; Santa Cruz Biotechnology), anti-IBA1 antibody (1:100; sc-32725; Santa Cruz Biotechnology). Sections were washed with PBS solution and incubated with IgG (H + L) highly cross-adsorbed goat anti-mouse secondary antibody, Alexa Fluor™ (1:1000 in PBS v/v, Molecular Probes, Altrincham, UK) for 1 h at 37 °C. After washing in PBS, nuclear staining with 4′,6′-diamidino-2-phenylindole (DAPI; Hoechst, Frankfurt, Germany) (2 µg/mL) in PBS was added. Slides were observed and photographed at 40× magnifications using a Leica DM2000 microscope (Leica QWin V3, Cambridge, UK).
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2

Immunostaining Analysis of Brain Slices

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Immunostaining analysis of brain slices was performed according to the method of Duncan and Miller49 (link) and Jang et al.22 (link). Microglial cells were visualized by staining with anti-Iba1 antibody (1:200, Santa Cruz). Apoptotic neuron cells were stained with anti-caspase-3 and anti-NeuN antibodies (1:500, Millipore). LPS were stained with ant-LPS antibody (1:200, Abcam). Briefly, the brains were cryoprotected in 30% sucrose-PBS and then frozen with optimal cutting temperature compound and stored at −80 °C until processed. Brain tissue blocks were cryosectioned at a thickness of 30 μm, stored at 4 °C in the storing solution (30% ethylene glycol in PBS), permeabilized in 0.5% Triton X-100 for 5 min, blocked in 10% bovine serum with tween 20-contained PBS for 30 min, and incubated for 16 h at 4 °C with antibodies. Secondary antibodies conjugated with Alexa Fluor 488 (1:1,000, Invitrogen) or Alexa Fluor 594 (1:500, Abcam) were then treated to visualize. Nuclei were stained with DAPI. Immunostained samples were scanned with a confocal laser microscope.
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3

Caspase-3 and Microglia Activation in Cerebral I/R

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Fluorescent staining was performed to examine caspase‐3 activity and microglia activation after cerebral I/R as described previously.30 (link) Briefly, brains from each group were harvested and immersion‐fixed in 4% buffered parafomaldehyde, embedded in paraffin, cut at 7 μm, and stained with an specific anti‐cleaved caspase‐3 antibody (Cell Signaling Technology, Inc) or anti‐Iba‐1 antibody (Santa Cruz Biotechnology, Inc) as described previously.30 (link) After washing, the tissue sections were incubated with FITC‐conjugated anti‐rabbit (GeneTex) for 1 hour at 25°C and covered with fluorescence mounting medium (Life Technologies). The images were viewed on an EVOS‐fl digital inverted fluorescent microscopy (Advanced Microscopy Group). Fields of cortex were randomly examined using a defined rectangular field area for analysis of microglia activation. Total cells were counted in each field, and Iba‐1‐positive activated microglia cells are presented as the percentage of total cells counted.
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4

Immunohistochemical Analysis of Brain Markers

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Immunohistochemical analysis was performed as already described [50 (link)]. Subsequently, the sections were incubated overnight with an anti-Bromodeoxyuridine (BrdU) antibody (1:100; Santa Cruz Biotechnology) or anti-MPO antibody (1:250; Santa Cruz Biotechnology) or anti-NRLP3 antibody (1:250; Santa Cruz Biotechnology) or anti-COX-2 antibody (1:250; Santa Cruz Biotechnology) or anti-Iba-1 antibody (1:250; Santa Cruz Biotechnology) or anti-GFAP antibody (1:450; Santa Cruz Biotechnology). Sections were washed with PBS and incubated with peroxidase-conjugated bovine anti-mouse IgG, secondary antibody (1:2000 Jackson Immuno Research, West Grove, PA, USA). Specific labeling was provided with a biotin-conjugated goat anti-mouse IgG and avidin-biotin peroxidase complex (Vector Laboratories, Burlingame, CA, USA). Images were collected using a Leica DM6 microscope associated with Leica LAS X Navigator software. The number of positive cells was counted in three sections per animal and presented as the number of positive cells per high-power field.
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