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6 protocols using ab4147

1

Asymmetric Division in HSCs

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Numb/α-tubulin (Numb: ab4147, Tubulin: ab7291, Abcam, Cambridge, UK) staining in FACS-purified LSKs or LT/ST-HSCs from chimeric mice, 5-FU-treated BL/6 and Ltbr−/− mice (8 days after treatment) or CML mice was performed as follows: cells were fixed with 4% paraformaldehyde, followed by permeabilization with 1× wash buffer (Dako wash, Agilent Technologies, California, USA) and blocking with 10% normal goat serum (Invitrogen, California, USA) in Dako wash. After overnight incubation at 4 °C with the primary rabbit α-Numb antibody or tubulin in Dako diluent, cells were incubated with the secondary antibody (donkey-anti-goat, ab175474; goat-anti-mouse, ab150115) for 1 h at room temperature63 (link). DAPI was used to stain for DNA. Asymmetric cell division was determined by an increase in Numb intensity of 1.8-fold in one of the daughter cells11 (link). Cells were acquired using an ImageStreamX MkII imaging flow cytometer (Merck, Darmstadt, Germany). Cells were analyzed using INSPIRE and IDEAS Software63 (link).
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2

Co-immunoprecipitation of MAD2B and Numb

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The whole cell lysates were prepared just as described above. Then equal amounts (1 mg) of total protein samples from three groups (Ctrl, HG and IgG) were incubated with 1 μg primary antibody overnight at 4 °C on a rotating device. The next day, 30 μl Protein A/G PLUS-Agarose (Santa Cruz Biotechnology, Santa Cruz, CA, USA) that had been washed with ice-cold PBS and centrifuged at 2,500 rpm for 5 min at 4 °C to remove supernatant, was then added to the mixture and rotated for 1 h at 4 °C. The pellets were collected by centrifugation at 2,500 rpm for 5 min at 4 °C and washed 3 times with 1.0 ml PBS for 5 min each time on a rotating device. Then the pellets were resuspended in 2 × SDS sample buffer and boiled in 98 °C for 5 min. The immunoprecipitated proteins were detected by western blotting analysis. The following primary antibodies were used for Co-IP in our present study: rabbit anti-MAD2B antibody (ab180579, Abcam), goat anti-Numb antibody (ab4147, Abcam), and horseradish peroxidase labeled donkey anti goat immunoglobulin G (A0181, Beyotime).
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3

Comprehensive Immunohistochemical Profiling of Stem Cell Markers

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Immunohistochemistry was performed according to the manufacturer's protocol. Paraffin-embedded slides were incubated with β-catenin (CST, 8480S, 1:100, USA), NICD (Abcam, ab8925, 1:200, USA), SFRP1 (Abcam, ab92552, 1:100, USA), DKK3 (Abcam, ab2459, 1:150, USA), GSK3β (Abcam, ab32391, 1:200, USA), RUNX3 (Abcam, ab92336, 1:150, USA), NUMB (Abcam, ab4147, 1:200, USA), CD133 (CST, 64326S, 1:300, USA), and ALDH1 (Abcam, ab52492, 1:75, USA). Primary antibodies were detected with avidin-biotin-peroxidase complexes with DAB substrate solution (Gene Tech, China).
For immunofluorescence, sections were incubated with β-catenin (CST, 8480, 1:100, USA), NICD antibody (Abcam, ab8925, 1:100, USA), CD133 (CST, 64326, 1:200, USA) and ALDH1 (Abcam, ab52492, 1:200, USA). The nucleus was counterstained with DAPI (CST, 4083, 1:1000, USA). The results were analyzed using a BX63 microscope (Olympus, Tokyo, Japan).
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4

Western Blot Analysis of Cellular Proteins

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The total protein of cultured cells and isolated renal glomeruli were extracted with RIPA lysis buffer (Beyotime, Shanghai, China). The total protein lysates were measured by a BCA protein assay kit (Beyotime). After being boiled for 5 min at 95 °C in SDS protein loading buffer, proteins were separated by SDS-PAGE and transferred onto PVDF membranes (Millipore Corp., Bedford, MA, USA). The membranes were blocked in 5% non-fat milk for 1 h at room temperature and then incubated with primary antibodies overnight at 4 °C. The following primary antibodies against the following targets were used in this study: MAD2B (1:1000, ab180579, Abcam), Numb (1:1500, ab4147, Abcam), NICD (1:1000, ab52627, Abcam), Hes-1 (1:1000, ab71559, Abcam), Desmin (1:1000, BS1712, Bioworld Technology, Louis Park, MN, USA), MDM2 (1:1000, ab16895, Abcam), active β-catenin (1:1000, #4270, Cell Signaling Technology, Danvers, MA, USA), β-actin (1:10000, sc-47778, Santa Cruz, CA, USA) and α-tubulin (1:3000, Protein Tech Group, Chicago, IL, USA). Finally, the membranes were incubated with horseradish secondary antibodies and detected by an ECL system (Thermo). The densitometric analysis of western blot images was measured by ImageJ software (National Institutes of Health).
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5

Western Blot Analysis of NUMB and NUMBL

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Protein extracts for Western blot analysis were obtained as described previously [17 (link)]. For Western blot detection, we used NUMB (ab4147, Abcam, 1 μg/mL) and NUMBL (ab37500, Abcam, 1 μg/mL) antibodies. α-Tubulin (T9026, Sigma) was used as a control. Horseradish peroxidase-labeled rabbit anti-mouse (ab97046, Abcam, diluted 1:5,000) and goat anti-rabbit (ab97051, Abcam, diluted 1:5,000) secondary antibodies were used.
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6

Comprehensive Immunoblotting Analysis

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Primary antibodies, including anti-Numb (ab4147, Abcam), anti-Snail (ab53519, Abcam), anti-Vimentin (ab92547, Abcam), anti-Twist (ab50581, Abcam), anti-E-cadherin (ab15148, Abcam), anti-␤catenin (ab6302, Abcam), anti-Cyclin-D1 (ab227561, Abcam), anti-Axin-2 (ab107613, Abcam), anti-C-myc (ab39688, Abcam), and anti-GAPDH (ab9485, Abcam), were purchased from Abcam (Shanghai, China). Horseradish peroxidase-labeled goat anti-rabbit (ab205718, Abcam) and goat anti-mouse secondary antibodies (ab205719, Abcam) were purchased from Abcam (Shanghai, China). IWR-1 (I0161-5MG, Abcam) and Wnt-3A (H17001, Abcam) were purchased from Sigma-Aldrich (Shanghai, China).
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