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3 protocols using vimentin vim

1

Protein Extraction and Western Blot Analysis

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Total proteins were prepared from fresh frozen tissue or cultured cell samples by complete cell lysis (Roche Mannheim, Germany) with protease and phosphatase inhibitors. Cytoplasmic proteins and nuclear proteins were isolated using the Nuclear and Cytoplasmic Protein Extraction Kit (Beyotime, Jiangsu, China). Denatured proteins (20–50 μg) were separated on sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels and transferred to nitrocellulose membranes. The following primary antibodies were used: vinculin (Millipore, Darmstadt, Germany), β-actin (Sigma-Aldrich Inc., St. Louis, MO, USA), β-catenin (BD Bioscience, San Jose, CA, USA), histone (Santa Cruz Biotechnology, Santa Cruz, CA, USA), E-cadherin (E-cad) (Cell Signaling Technology, Boston, MA, USA) and vimentin (VIM) (Santa Cruz). The bands were scanned using the ChemiDocXRS+ Imaging System (Bio-Rad, Hercules, CA, USA) and quantified using Quantity One v4.6.2 software (Bio-Rad).
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2

Western Blot Analysis of Cellular Markers

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After 24 h of treatment, cells were lysed in a buffer (50 mM Tris–HCl pH 5.5, 150 mM NaCl, Triton X-100 0.5%) added with a complete protease inhibitor (Roche Applied Science). Equal amounts of proteins were denatured at 100 °C for 10 min and subjected to SDS-PAGE on 10% polyacrylamide gel. After the run, the proteins were electro-transferred on nitrocellulose membranes. Saturation of non-specific sites was performed for 2 h at room temperature in 5% milk in the TBST buffer (50 mM Tris–HCl, pH 7.4, 150 mM NaCl, 0.1% Tween 20). The membranes were exposed to primary antibodies directed against GAPDH (Santa Cruz sc-25778), α-SMA (Sigma A5228), VIMENTIN (VIM) (Santa Cruz 7557), FIBRONECTIN (FN) (Santa Cruz sc-9068) overnight at 4 °C and subsequently incubated with a secondary antibody conjugated with peroxidase for 1 h at room temperature. The signal was detected with Luminata™ Forte Western HRP Substrate (Millipore) according to the manufacturer’s instructions and the signal was acquired with Mini HD9 (UVItec, Cambridge). The band intensities were quantified using the UVItec Image Program.
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3

Immunofluorescence Staining of CDH1 and Vimentin

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Cells were fixed in EM grade 4% formaldehyde and permeabilized with 0.1% Triton X-100 and staining with primary antibodies CDH1 (BD Biosciences) and Vimentin (VIM, Santa Cruz) was carried out overnight at 4°C. Alexa594-conjugated goat-anti-mouse secondary antibody (Molecular Probes) was used for primary mouse monoclonal antibodies and Alexa-488 conjugated goat-anti-rabbit secondary antibody was used for primary rabbit polyclonal antibodies (Molecular Probes). Nuclei were visualized using DAPI.
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