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8 protocols using sc 8784

1

Protein Expression Analysis in LX2 and Huh7 Cells

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After treatment with TGFβ, LX2 and Huh7 cells were scraped in RIPA buffer (50 mM Tris HCl, pH 7.4, 1% Triton X-100, 0.2% SDS, 1 mM EDTA, 1 mM PMSF and 5 μg/ml leupeptin) to obtain total protein extracts. Also, protein content from LX2 and Huh7 culture supernatants were concentrated using ultrafiltration units (Vivaspin Turbo 4 Ultrafiltration Unit.VS04T21, Sartorius, Thermo Fisher Scientific Inc.). Protein extracts and concentrated supernatants were boiled in Laemmli sample buffer prior to electrophoresis in 10% SDS-PAGE. Proteins were then transferred to an immunoblot nitrocellulose membrane (Bio-Rad) that was blocked with 5% non-fat dry milk and exposed to primary BMP8A antibody (ab154373 Abcam plc, Cambridge, UK), αSMA (A-2547, Merck Life Science, Darmstadt, Germany) and COL1A1 (SC-8784, Santa Cruz Biotechnology Inc., Heidelberg, Germany) antibodies overnight at 4 °C. After the incubation with the corresponding secondary antibody (Santa Cruz Biotechnology Inc.), immunoreactive bands were visualized using the ECL Western blotting protocol (Bio-Rad). Densitometric analysis of the bands was performed using Image J software. Ponceau staining was used as loading control.
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2

Quantifying Collagen I and CD36 Proteins

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Western blot analysis was performed for the determination of the protein content of mature Col1a1 (sc-8784, Santa Cruz Biotechnology, Santa Cruz, CA) and CD36 (ab133625, Abcam, Cambridge, MA), as previously described [13 (link)]. To control for equal protein loading and transfer, membranes were visualized with Ponceau S as previously described [13 (link)]. All data are expressed in arbitrary units.
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3

Comprehensive Antibody Characterization

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Antibodies against p-CaMKII (1:500, ab32678), p-RyR2(S2808) (1:500, ab59225), RyR2 (1:200. ab117840), α-SMA (1:1000, ab5694), and Desmoplakin (1:200, ab106342) were purchased from Abcam. Flag-M2 (1:1000, F1804) and α-Actinin (1:1000, A7737) were obtained from Sigma-Aldrich. Antibodies against Gapdh (1:1000, LFPA0018) and HA (1:1000, LFMA0048) were from AbFrontier. Collagen1 (1:1000, SC-8784) and HSP90 (1:1000, SC-7947) were obtained from Santa Cruz Biotechnology. PRMT1 (1:500, 07-404) and Oxi-CaMKII (1:500, 07-1387) were from Millipore. N-cadherin antibody (1:500, 610921) was from BD biosciences. ANP (1:500, PA5-29559) and Zonula Occludens-1 (1:200, 40-2200) were from Thermo Fisher Scientific. Antibodies against ASYM (1:200, 13522), Connexin43 (1:1000, 3512) and CaMKII (1:1000, 3362) were from Cell Signaling Technology. Anti-mouse (1:5000, 115-035-033), anti-rabbit (1:5000, 111-035-003) IgG peroxidase-conjugated secondary antibodies were purchased from Jackson Immunoresearch Laboratories and anti-goat (1:5000, 81-1620) IgG peroxidase-conjugated secondary antibodies was ordered from Thermo Fisher Scientifics.
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4

Protein Expression Analysis by Western Blot

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We mixed 30-µg protein extracts with a sample buffer, boiled them for 10 min, and performed electrophoresis using 8–15% sodium dodecyl sulfate-polyacrylamide gels. We transferred the proteins in the gels to a polyvinylidene difluoride membrane and incubated the blots with primary antibodies against COL1α1 (sc-8784, Santa Cruz, CA, USA), PPARγ (16643-1-AP, PROTEINTECH, IL), TFAM (sc-166965, Santa Cruz, CA, USA), CD36/SR-B3 (NB400-144, Novus Biologicals, CO, USA), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (60004-1-lg, PROTEINTECH, IL, USA) for protein control. After washing the blots with tris-buffered saline and incubating them with horseradish peroxidase-coupled anti-rabbit immunoglobulin-G antibodies (dilution, 1:5000, NEF812001EA, PerkinElmer, MA, USA), HRP anti-mouse immunoglobulin-G antibodies (dilution, 1:10,000, NEF822001, PerkinElmer, MA, USA),), and HRP anti-goat immunoglobulin-G antibodies (dilution, 1:10,000, sc-2354, Santa Cruz, CA, USA) at room temperature for 1 h, we developed them with enhanced chemiluminescence detection (GE Healthcare Biosciences AB, Uppsala, Sweden), exposed them to film, and quantified the signals by using densitometry.
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5

Evaluating UVA-induced Skin Damage

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Dorsal skin tissue samples were collected at various time points following the final UVA irradiation; 1, and 6 h post-irradiation for Nrf2 and its target proteins, respectively; 1 h post-irradiation for oxidative DNA damage; 24 h post-irradiation for MMP-1 and collagen. Tissue sections were washed with PBS for 5 min/time (3 times) and blocked with phosphate-buffered saline (PBS) containing 2% BSA for 30 min. After removing excess blocking buffer, the slides were incubated with Nrf2 Ab (ab31163; Abcam, Cambridge, MA, United States), GST Ab (sc-459; Santa Cruz Biotechnology, Santa Cruz, CA), NQO1 Ab (ab34173; Abcam, Cambridge, MA, United States) (1:50), 8-OHdG [N45.1] Ab (ab48508; Abcam, Cambridge, MA, United States) (1:50), MMP-1 Ab (ab137332; Abcam, Cambridge, MA, United States) (1:50), collagen I (C-18) Ab (sc-8784; Santa Cruz Biotechnology, Santa Cruz, CA) (1:50) for 1 h. The slides were then washed for 5 min/time (3 times) with a PBS solution and incubated for 1 h at room temperature with FITC-conjugated the secondary Ab (green) and with DAPI (blue) to counterstain the nuclei for detection of nuclear Nrf2, the secondary Ab Alexa Fluor 488 goat anti-rabbit (Abcam) for detection of MMP-1 and collagen levels. An inverted fluorescent microscope equipped with a Nikon Intensilight was used for the imaging of IF stainings (20X) which were quantified using ImageJ software.
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6

Protein Expression Analysis Protocol

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Cells were collected and lysed with ice-cold RIPA lysis buffer containing protease inhibitor cocktail (Roche, Germany). The lysates were separated by SDS-PAGE and then transferred onto PVDF membranes (Bio-Rad). After blocking with 5% BSA, the membranes were incubated with primary antibodies against CD26 (1: 1000, ab187048, Abcam), Col1 (1: 500, sc-8784, Santa Cruz), and GAPDH (1: 2000, #2118, CST) overnight at 4°C. After incubation of the membranes with horseradish peroxidase (HRP)-conjugated secondary antibodies (Santa Cruz), the blots were finally visualized by enhanced chemiluminescence (Bio-Rad).
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7

Protein Expression Profile Analysis

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Tissue protein samples were electrophoresed on a sodium dodecyl sulfate polyacrylamide gel and transferred to a polyvinylidene difluoride membrane (162–0180, Bio-Rad, Hercules, CA, USA). Membranes were incubated with rabbit anti-TRPV1 antibody (1:1000, RA10110, Neuromics, Edina, MN, USA), mouse anti-TNF-α monoclonal antibody (1:500, T-3198, Sigma-Aldrich, St. Louis, MO. USA), mouse anti-IL-1β monoclonal antibody (1:200, sc-74138, Santa Cruz Biotechnology, Santa Cruz, CA, USA), rabbit anti-connective tissue growth factor (CTGF) antibody (1:200, sc-25440, Santa Cruz Biotechnology), rabbit anti-collagen I antibody (1:200, sc-8784, Santa Cruz Biotechnology), rabbit anti-collagen IV antibody (1:200, sc-11360, Santa Cruz Biotechnology), or anti-β-actin antibody (1:2,000, sc-69879, Santa Cruz Biotechnology) at 4 °C overnight, followed by incubation with horseradish peroxidase-labeled secondary antibodies for 2h at room temperature. The immunoreactive bands were visualized by ECL reagents (RPN 2106, Amersham, GE Healthcare, Piscataway, NJ, USA). The intensity of the bands was determined by using ImageJ (NIH, Bethesda, MA, USA).
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8

Protein Expression Analysis in LX2 and Huh7 Cells

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After treatment with TGFβ, LX2 and Huh7 cells were scraped in RIPA buffer (50 mM Tris HCl, pH 7.4, 1% Triton X-100, 0.2% SDS, 1 mM EDTA, 1 mM PMSF and 5 μg/ml leupeptin) to obtain total protein extracts. Also, protein content from LX2 and Huh7 culture supernatants were concentrated using ultrafiltration units (Vivaspin Turbo 4 Ultrafiltration Unit.VS04T21, Sartorius, Thermo Fisher Scientific Inc.). Protein extracts and concentrated supernatants were boiled in Laemmli sample buffer prior to electrophoresis in 10% SDS-PAGE. Proteins were then transferred to an immunoblot nitrocellulose membrane (Bio-Rad) that was blocked with 5% non-fat dry milk and exposed to primary BMP8A antibody (ab154373 Abcam plc, Cambridge, UK), αSMA (A-2547, Merck Life Science, Darmstadt, Germany) and COL1A1 (SC-8784, Santa Cruz Biotechnology Inc., Heidelberg, Germany) antibodies overnight at 4 °C. After the incubation with the corresponding secondary antibody (Santa Cruz Biotechnology Inc.), immunoreactive bands were visualized using the ECL Western blotting protocol (Bio-Rad). Densitometric analysis of the bands was performed using Image J software. Ponceau staining was used as loading control.
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