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Cfx384 real time system

Manufactured by Toyobo
Sourced in Japan

The CFX384 Real-Time system is a compact and versatile instrument designed for real-time PCR analysis. It features a 384-well format and is capable of performing sensitive and accurate quantitative PCR experiments across a wide range of applications.

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2 protocols using cfx384 real time system

1

Quantification of Mitochondrial DNA Content

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Mitochondrial DNA (mtDNA) content was measured according to the method described by Venegas et al. (46 (link)) with minor modifications. The mtDNA content was defined as the relative ratio between mitochondrial gene (tRNALeu(UUR)) copy number and simultaneously measured copy number of a nuclear gene (β-2-microglobulin, β2M) using qPCR analysis. The qPCR analysis was conducted using a Bio-Rad CFX384 Real-Time system with the SYBR Green qPCR Mix (TOYOBO). Briefly, total hMSC DNAs were purified using Genomic DNA Buffer Set/Genomic-tip 20/G Kit (QIAGEN). 0.5 ng genomic DNAs were used to perform qPCR assays, which generated a datasheet with the CT value for each qPCR. Relative mtDNA content was measured by the difference in ΔCT between the tRNALeu(UUR) and β2M genes, which was calculated as (β2M average CT) – (tRNALeu(UUR) average CT) = ΔCT, 2 × 2(ΔCT) = mtDNA content. qPCR primers used to calculate mtDNA content are listed in Supplementary Table S1.
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2

Quantitative Analysis of Hypothalamus Gene Expression

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The total RNA of the hypothalamus was reverse transcribed into cDNA by utilizing the RevertAid First Strand cDNA synthesis kit (K1621, Thermo Scientific, USA), and the oligonucleotide primers of DE genes and lincRNAs were designed with Oligo7. The primer sequences of DE genes and lincRNAs are listed in Table S1. The relative expression levels of DE genes and lincRNAs in the hypothalamus were quantified through qPCR with YWHAZ as a separate internal control [23 (link)]. qPCR assay was conducted on a Bio-Rad CFX384 Real-Time System with a SYBR Green PCR Master Mix reagent (Toyobo, Japan) in accordance with the instruction's manual. Reactions were done thrice in 384-well plates, and each well contained 5 μL of 2× SYBR Green PCR Master Mixture, 0.2 μL of forward and reverse primers, 1 μL of template cDNA, and 3.6 μL of RNase-free water. The samples were preincubated at 95°C for 5 min and subjected to 40 PCR amplification cycles (95°C for 30 s, 60°C for 30 s, and 72°C for 20 s). The relative gene and lincRNA expression levels of qPCR data were analysed using the 2-ΔΔCT method, and the statistical analysis method used for DE analysis was presented in Table S2. Significance level was set at p < 0.05.
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