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8 protocols using ab109451

1

Western Blot Analysis of PRMT5

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Cells were harvested and lysed in cell lysis buffer (Beyotime). Cell lysates were incubated on ice for 15 mins and centrifuged at 12,000 rpm for 10 mins at 4°C. Protein levels were measured by BCA Protein Assay Kit (Thermo Fisher Scientific, San Jose, CA, USA). Boiled samples were loaded equally into SDS-PAGE and transferred onto PDVF membranes (Roche, Basel, Switzerland). After 1 hr blocking in 5% milk at room temperature, membranes were incubated with primary antibodies and rotated overnight at 4°C. After washing with PBS containing 0.1% Tween-20 and incubation of secondary antibodies, ECL Western Blotting Substrate (Thermo Fisher Scientific) was used to detect protein bands. Antibodies used for western blot assay were: PRMT5 (Abcam, USA, ab109451) and GAPDH (Abcam, USA, ab181602).
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2

Western Blot Analysis of Protein Markers

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Cells were harvested and lysed in RIPA buffer. Proteins from lysed cells were separated from 8 to 12% SDS‐PAGE gels and transferred to 0.22 μm polyvinylidene difluoride membranes (Millipore, Frankfurt, Germany). Then, 5% milk in TBST was used to block nonspecific binding sites. The membranes were incubated with primary antibodies overnight at 4°C. Then, the blots were washed with 0.1% TBST three times and incubated with horseradish peroxidase‐conjugated antibodies. The protein was detected using SuperSignal West Dura (Thermo, Waltham, USA). The antibodies used for western blotting were against GAPDH (sc‐293335), PRMT5 (Abcam ab109451), BTG2 (Abcam ab85051), Cyclin D1 (Abcam ab134175), Cyclin E1 (sc‐377100), p44/42 MAPK (Erk1/2) (CST #4695), phospho‐p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (CST #4370), phospho‐c‐Raf (Ser338) (CST #9427), Histone H4 symmetric dimethyl R3 (H4R3me2s) (Abcam ab5823), and Histone H3 (Abcam ab1791).
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3

Immunohistochemical Analysis of PRMT5 and PD-L1 in Cervical Cancer

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A tissue microarray (CXC962) was purchased from Shanghai Superbiotek Company. IHC was performed using an anti-PRMT5 antibody (1:50, #ab109451, Abcam). Each sample was assigned a score according to the intensity of the staining (0 = no staining, 1 = weak staining, 2 = moderate staining, and 3 = strong staining) and the proportion of the stained cells (1 = 1%-25%, 2 = 25%-50%, 3 = 50%-75%, and 4 = 75%-100%). The stained tissues were scored by clinical pathologists. Mouse IHC analysis was performed to determine PD-L1 expression in cervical cancer tissues using an anti-PD-L1 antibody (1:50, #ab213480, Abcam). The results were scanned with Digital Pathology Slide Scanner (KF-PRO-120).
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4

Investigating PRMT5, HP1γ, and GR Interactions

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Cos-7 cells were seeded onto 10-cm2 dishes the day before transfection. The following plasmids psg5-V5-PRMT5, pcdna3.1-HA-HP1γ, and pcdna3.1-GR were transfected into Cos-7 cells using Lipofectamine 2000 (Invitrogen) according to the manufacturer’s protocol. 48 h after transfection, cells were treated (or not) with Dex for 24 h, and cell extracts were prepared in RIPA buffer (50 mM Tris–HCl, pH 8.0, 150 mM NaCl, 1 mM EDTA, 1% NP-40, and 0.25% deoxycholate) supplemented with protease inhibitor tablets and phosphatase inhibitors (1 mM NaF, 1 mM Na3VO4, and 1 mM β-glycerophosphate). Protein extracts were incubated with HP1γ primary antibody (ab10480; Abcam), PRMT5 (ab109451; Abcam) or GR/DGH2L (#12041; Cell signaling) over night at 4°C under agitation. Protein A Agarose (Millipore) beads were then added, and the mixture was incubated 2 h at 4°C. The immunoprecipitates were separated on SDS–PAGE. Immunoblotting was conducted with primary antibodies against GR G-5 (sc-393232; Santa Cruz), GR/D6H2L (#12041; Cell signaling), HP1γ (ab10480; Abcam), and PRMT5 (07-405; Millipore). Secondary antibodies were used for chemiluminescence detection using the ECL detection reagent (Roche Molecular Biochemicals) according to the manufacturer’s instructions. For immunoprecipitation experiments, 3% of the input of each sample was analyzed by immunoblot.
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5

Quantification of PRMT5 Isoform Expression

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Total RNA was extracted using RNAiso Plus (Takara, China) according to the manufacturer’s protocol. Quantitative PCR analysis of PRMT5-ISO5 was carried out with 10 μL TB Green™ Premix Ex Taq™ II (Takara, China) by the QuantStudio 3 Real-Time PCR System (Applied Biosystems, Waltham, MA, USA). The primers for RT-qPCR are shown in Supplementary Table S1.
Proteins extracted from cells and tissues were measured and heat denatured. Equal amounts of proteins were separated using 10% or 12% SDS-PAGE and transferred to PVDF membranes (Millipore, Boston, MA, USA). After saturating, the membranes were incubated with anti-PRMT5 (ab109451, Abcam, Boston, MA, USA), anti-HNRNPH1 (ab10374, Abcam, Boston, MA, USA), anti-SRSF3 (ab198291, Abcam, Boston, MA, USA), anti-AKT1 (75692S, CST, Boston, MA, USA), anti-phospho-AKT (Ser473) (4060S, CST, Boston, MA, USA), anti-SDMA (13222S, CST, Boston, MA, USA) or anti-GAPDH (60004-1-Ig, Proteintech, Shanghai, China), and subsequently incubated with HRP-conjugated secondary antibodies (Biosharp, Guangzhou, China). Finally, the membranes were detected using Pierce™ ECL Western Blotting Substrate (Thermo Fisher Scientific, Waltham, MA, USA) and visualized with ChemiScope 6100 (CliNX Science Instruments, China).
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6

Immunostaining of Germ Cell Markers

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Cells were fixed in 4 % paraformaldehyde for 15 min, washed twice in phosphate-buffered saline, and then incubated with 10 % goat serum at 37 °C for 15 min. Primary anti-Fragilis antibody (ab15592, Abcam, 1:200), anti-Mvh antibody (ab13840, Abcam, 1:100) or anti-Prmt5 (ab109451, Abcam, 1:50), and secondary antibody IgG (SA00003-2, Proteintech, 1:200) were used for immunostaining. Images were acquired using a Nikon A1Si confocal microscope or Leika DMI 3000 B inverted microscope.
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7

Immunohistochemical Analysis of PRMT5 and BTG2

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The expression of PRMT5 and BTG2 proteins was assessed with immunohistochemistry in a tissue microarray using rabbit polyclonal antibodies specifically against PRMT5 (Abcam, Cambridge, USA ab109451), BTG2 (Abcam, Cambridge, USA ab85051), and Ki67 (Abcam, Cambridge, USA ab15580). Immunohistochemistry staining was performed using the Dako Envision Plus System (Dako, Carpinteria, CA) according to the manufacturer's protocol.
Each sample was independently scored by two pathologists who were blinded to all the patient clinical data. The intensity of staining was scored as 0 (negative), 1 (weak), 2 (moderate), or 3 (strong). Based on the percentage of positive tumor cells, the extent of staining was scored 0 (negative), 1 (1–25%), 2 (26–50%), 3 (51–75%), or 4 (76–100%). The final score for each slide was assessed by multiplying the scores for intensity and extent of staining. The slide was considered negative if the score was <5 and positive if the score was above 5.
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8

Western Blot Analysis of Methylation Enzymes

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Cell pellets were lysed in 1× Laemmeli buffer and heated at 95°C. Lysates were then sonicated for protein extraction, and supernatants were quantified via bicinchoninic acid protein assay (Thermo Fisher Scientific). Protein was resolved by 4% to 20% gradient gels (Biorad) and transferred to polyvinylidene difluoride membranes. Blots were blocked with 5% bovine serum albumin and incubated overnight at 4°C with antibodies against PRMT5 (ab109451; Abcam), SDMA (13222S; Cell signaling), METTL3 (ab195352; Abcam), METTL14 (ABE1338; Millipore), cleaved caspase-3 (#9664; Cell signaling), c-MYC (#5605; Cell signaling), or β-Actin-HRP (A5441; Sigma). After washing, membranes were incubated with secondary antibodies for 1 hour at RT. Blots were developed using Western Lightning ECL Pro (Perkin Elmer) and imaged on Chemi-doc imaging system.
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