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5 protocols using ab98929

1

Quantitative Western Blot Analysis

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Proteins from total cell lysates (10 to 20 μg) were separated by SDS-PAGE, transferred onto PVDF membranes (Hybond 0.2 μm; Amersham GE Life Sciences), and probed using the indicated antibodies. The secondary HRP-conjugated antibody was visualized by chemiluminescence (SeraCare developer solution). For anti-tubulin probing, membranes were first treated with stripping buffer (Thermo Scientific), washed, and reprobed. Polyclonal rabbit antibodies against VPS35 (ab97545; abcam), VPS29 (ab98929; abcam), rabbit monoclonal antibody against VPS26 (ab98929; abcam) or mouse monoclonal antibody against β-tubulin (catalog no. T8328; Sigma) were used according to the manufacturer’s instructions. Quantification of immunoblots was performed using ImageJ.
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2

Antibody Panel for Endosomal Trafficking

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Antibodies used in this study are as follows: SNX1 [clone 51; 611482; BD Bioscience; immunofluorescence (IF) 1:200], GLUT1 (ab40084; Abcam; IF 1:200), Golgin97 (clone CDF4; A-21270; Thermo Fisher Scientific; IF 1:400), VPS26 (ab23892; Abcam; IF 1:200), VPS35 (ab10099; Abcam; IF 1:200), VPS35 [ab97545; Abcam; IF 1:200), VPS35 [ab157220; Abcam; western blotting (WB) 1:1000], VPS29 (ab98929; Abcam; WB 1:200), FAM21 (gift from Daniel D. Billadeau, Mayo Clinic, Rochester, MN; IF 1:400), EEA1 (N-19; sc-6415; Santa Cruz Biotechnology; IF 1:200), TGN46 (AHP500G; Bio-Rad Laboratories; IF 1:200), anti-Myc (gift from Harry Mellor, The University of Bristol, UK; IF 1:500), LAMP1 (DSHB Hybridoma Product; H4A3; deposited to the DSHB by August, J.T./Hildreth, J.E.K.; IF 1:500), LAMP1 (ab24170; Abcam; IF 1:200), mouse EEA1 (610457; BD Bioscience; IF 1:200), CI-MPR (ab124767; Abcam; WB 1:1000, IF 1:200), Itgβ1 (TS2/16; IF 1:200), SNX6 (Clone D-5; 365965; Santa Cruz Biotechnology; WB 1:500), PMP70 (PA1-650; Invitrogen; IF 1:200), WASH1 (gift from Daniel D. Billadeau; IF 1:400), C16orf62 (PA5-28553; Pierce; IF 1:200), sortilin (ab16640; Abcam; WB 1:1000), cathepsin D (21327-1-AP, Proteintech; WB 1:1000), SNX5 (ab180520; Abcam; WB 1:500) and β-actin (A1978; Sigma-Aldrich; WB 1:2000).
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3

Antibody Inventory for Organelle Studies

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Antibodies used in this study were: From Abcam: rabbit anti–CI-MPR (ab124767), rabbit anti-LAMP1 (ab24170), rabbit anti-GLUT1 (ab15309), rabbit anti-VPS35 (ab97545), rabbit anti-VPS26 (ab181352), rabbit anti-VPS29 (ab98929), mouse anti-SNX27 (ab77799), rabbit anti-SNX5 (ab18520), and rabbit anti-INSR (ab131238). From BD: mouse anti-EEA1 (610457), mouse anti-SNX1 (611482), and mouse anti-SNX2 (611308). From AbD Serotec/Bio-Rad Laboratories: sheep anti-TGN46 (AHP500) and mouse anti–CI-MPR (anti-CD222; clone MEM-238). Further antibodies used were: rabbit anti–IGF1R β (9750; Cell Signaling Technology), mouse anti-GAPDH (10494-1-AP; Proteintech), rabbit anti-GGA2 (10356-1-AP; Proteintech), rabbit anti-AP1B1 (16932-1-AP; Proteintech), mouse anti-SNX6 (S6324; Sigma-Aldrich), rat anti-myc (clone 9E1; ChromoTek), and rat anti-GFP (clone 3H9; ChromoTek).
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4

Western Blot Analysis of Muscle Proteins

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Protein lysates isolated from orange adductor muscles and white adductor muscles were used for Western blot analysis as described by Funabara et al. [43 (link)]. Proteins were separated through SDS-PAGE and subsequently transferred to polyvinylidene fluoride membranes. The membranes were incubated overnight at 4 °C with primary antibodies. Tubulin was selected as the internal control. The primary antibodies were anti-tubulin (Abcam, ab6160, USA), anti-RAB11A (Abcam, ab65200, USA), anti-VPS (Abcam, ab98929, USA) and anti-TIF (abcam, ab230321, USA). Then, the membranes were rinsed thrice with TBS and were incubated with secondary antibodies (Beyotime, A0208) for 2 h at 37 °C. Gel documentation was observed using AlphaImager® HP (ProteinSimple, 92–13,824-00, USA). Band intensity was quantified with IPWIN software.
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5

Antibody Characterization for Cellular Trafficking

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Antibodies used in this study were rabbit monoclonal α5 integrin (ab150361; Abcam), mouse monoclonal β–actin (A1978; Sigma-Aldrich), rabbit monoclonal CI-MPR (ab124767; Abcam), rabbit polyclonal DENND4C (HPA014917; Sigma-Aldrich), rabbit monoclonal EEA1 (C45B10; Cell Signaling Technology), mouse monoclonal GFP (11814460001; Roche), rabbit monoclonal GLUT1 (115730; Abcam), mouse monoclonal LAMP1 (H4A3; Developmental Studies Hybridoma Bank), rabbit polyclonal PKD2 (sc-25749; Santa Cruz Biotechnology, Inc.), mouse monoclonal SNX27 (ab77799; Abcam), rabbit polyclonal Strumpellin (87442; Santa Cruz Biotechnology, Inc.), rabbit polyclonal VPS35 (97545; Abcam), rabbit monoclonal VPS35 (157220; Abcam), rabbit polyclonal VPS26A (ab137447; Abcam), rabbit polyclonal VPS29 (ab98929; Abcam), and rabbit polyclonal WASH1 and FAM21 (gifts from D.D. Billadeau, Mayo Clinic, Rochester, MN).
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