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9 protocols using paraformaldehyde (pfa)

1

Visualization of PD-L1 Membrane Anchoring

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To verify the ability of map‐PD‐L1 to anchor to the cell membrane, we incubated rgEC with 5 μg/ml map‐PD‐L1 or PD‐L1 at 37°C for 1 h. Cells were then fixed in 4% paraformaldehyde (C01‐06002; Bioss), permeabilized with 0.1% Triton X‐100 (C03‐03001; Bioss) in phosphate‐buffered saline (PBS), and incubated with rabbit anti‐PD‐L1 polyclonal antibody (20 μg/ml; NBP1‐76769; Novus Biologicals) overnight at 4°C in humidified chambers. The cells were then incubated with Alexa Fluor‐conjugated secondary antibodies (1:100; CA11012S; Invitrogen) for 1 h at room temperature. Sections were visualized with 4′‐6′‐diamidino‐2‐phenylindole (DAPI; Sigma‐Aldrich) and then examined using confocal laser scanning microscope (Zeiss LSM880).
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2

Cell Viability and Colony Formation Assay

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Cell viability was examined by Cell Counting Kit-8 (CCK-8; Monmouth Junction, NJ, MedChemExpress, USA) and colony formation assay. After 48 h of transfection, transfected cells (2 × 103 cells/well) were seeded into a 96-well plate and cultured at 37 °C, with 5% of CO2 for 6 h, 24 h, 48 h, 72 h, 96 h. The 10 µl CCK-8 reagent was added to each well and incubated at 37 °C for 2 h in dark, the absorbance at 450 nm was measured by a microplate reader (Molecular DevicesCMax Plus, USA). For colony formation assay, after 48 h of transfection, transfected cells (4 × 102 cells/well) were seeded into 6-well plates for about 2 weeks and the medium was exchanged every other day. The cell colonies were fixed using 4% Paraformaldehyde (Bioss, Beijing, China) for 15 mins and stained using crystal violet (Sigma Life Science) for 30 mins at room temperature. The colony number was counted by manually.
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3

Histopathological Analysis of Muscular Stomach

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In order to analyze the effect of BPA or/and low-Se on the pathological histology and inflammation of muscular stomach tissue, the tissues were fixed in 4% paraformaldehyde (Bioss, China) for at least 24 h in 4°C. Referred to our previously study, the paraffin wax blocks and sections of muscular stomach were made (3 μm) and stained with hematoxylin and eosin (H&E) (Shi et al., 2023 (link)). CaseViewer software was to obtain the structural image of muscular stomach tissue.
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4

Cell Migration Quantification Assay

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The ability of cell migration was examined by the transwell assays. After 48 h of transfection, transfected cells (5 × 104 cells/well) were seeded into the upper chamber (Corning Life Sciences, MA, USA) with 200 µL serum-free medium, and 600 µL10% serum-containing medium was added to the lower chamber. After incubation for 24 h, the cells on the upper membrane were wiped off by cotton swab, and the cells under membrane were fixed with 4% Paraformaldehyde (Bioss, Beijing, China) for 15mins, then stained with 0.1% crystal violet (Sigma Life Science) for 15mins and counted using inverted microscope in randomly selected fields.
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5

Cell Proliferation on Ti and TNT Disks

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Raw Ti and TNT disks were disinfected and uviolized before cell seeding. HGFs were harvested and seeded on each disk with the density of 2500 cells, and cultured for 1/4/7 days. Indirect immunofluorescence assay was used to evaluate the cell proliferation. At each endpoint of cell culture, HGFs were fixed with 4% paraformaldehyde (Bioss, Beijing, China). Then cells were permeated with 0.3% Triton X-100 and blocked with 5% (w/v) bovine serum albumin (BSA; Sigma Aldrich, USA) for 1 hr at room temperature. Samples were then mounted in antifade reagent with DAPI (P0126-5mL, Beyotime, China). Images were captured via confocal laser scanning microscopy (LSM880, Zeiss, Germany). In the captured images, each blue dot of DAPI represented a single cell. The cell count was represented by the nucleus count at each timepoint.
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6

Efficient map-PD-L1 Anchoring to rgEC

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To explore the efficiency of map‐PD‐L1 anchoring to rgEC, a cell suspension was generated, consisting of 1 × 105 per tube. Subsequently, cells were washed twice with PBS and then incubated with fluorescein isothiocyanate (FITC)‐labeled map‐PD‐L1 at different concentrations, temperatures, and incubation times. The cells were then fixed in 4% paraformaldehyde (C01‐06002; Bioss) and analyzed using a FACscan flow cytometer (Becton Dickinson).
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7

Colony Formation Assay with Anlotinib

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Cells were seeded in 6-well plates at a density of 300 cells per well. 24 h later, the medium was replaced by fresh one with Anlotinib of the optimal concentration resulted from CCK-8 Assay while medium of control group was replaced without any change in constitution. After another 24 h of incubation together, medium of both groups was removed to be added with fresh Anlotinib-free medium, followed by 14-day incubation during which medium was freshened on a regular basis. At the end of the assay, colonies were visible enough to be fixed with 4% Paraformaldehyde (Bioss, Beijing, China) for 15 min and another 15-min staining with crystal violet (Sigma Life Science), after which the results were all processed with the help of ImageJ.
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8

3D-Printed Porous Titanium Scaffold Fabrication

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3D-Printed porous Ti6Al4V scaffolds (diameter: 10 mm, height: 3 mm) were produced using the electron beam melting machine (EBM Q10 Plus, Arcam AB, United States). 4A zeolites were purchased from AOS Catalytic Materials Co., Ltd. (China); NaSiO3•9H2O from Xilong Scientific (China); NaAlO2 from Macklin (China); ammonium bifluoride (NH4HF2) from Aladdin Reagent Co., Ltd. (China); poly dimethyl diallyl ammonium chloride solution (PDDA) from Aladdin (China); and polyacrylic acid (PAA) from Acros Organic (Belgium). Dulbecco’s Modified Eagle’s Medium (DMEM)/F-12 and fetal bovine serum (FBS) were purchased from Gibco (United States). Phosphate-buffered saline (PBS), 4% paraformaldehyde, and phalloidin-FITC were purchased from Bioss (China). Calcein acetoxymethyl ester (Calcein-AM)/propidium iodide (PI) staining kit was purchased from Bestbio (China) and 4′,6-diamidino-2-phenylindole (DAPI) from Sigma–Aldrich (St. Louis, MO).
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9

CDK5RAP1 Silencing in A375 Cells

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A375 cells were plated in six-well plates at a density of 1×105 cells/well and pretreated with or without PDTC (100 µmol). Cells were washed with PBS after transfection with CDK5RAP1 siRNA or control siRNA for 48 h. Cells were then fixed in 4% paraformaldehyde (BIOSS, Beijing, China) for 30 min at 22°C followed by staining with Hoechst 33342 (20 mg/ml) for 15 min at room temperature in the dark. Cells were then imaged by using fluorescence microscopy (C1-T-SM; Nikon Corporation, Tokyo, Japan) at a magnification, ×100.
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