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5 protocols using lipofectoamine 2000

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Investigating MAGE-A12 Mediated Cell Viability

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The Cell Titer Glo cell viability assay kit was purchased from Promega. RNAiMAX and Lipofectoamine 2000 were obtained from Life Technologies. Opti-MEM was purchased from GIBCO. RPMI and DMEM media were purchased from Cellgro. Pre-designed small interfering RNA (siRNA) directed against human MAGE-A12 (silencer select, siRNA#1 (s8451): 5’-CACUCUAUUCUGUAAAUUU-3’, siRNA#2 (s8453): 5’-GGAGACGAGCUUCCAAGUA-3’), CDKN1A (p21, siRNA#1: s417), and a negative scramble control (#1) were purchased from Life Technologies. MG132 was purchased from Calbiochem. Antibodies against MAGE-A12 (mouse monoclonal, ab87973, Abcam), p53 (Ab-6, Merck), Cdk1 (610037, BD), Cdk2 (610145, BD), phospho-cdc2 (Y15) (#9111, CST), cdc25C (#4688, CST), alpha-tubulin (T5168, Sigma), FLAG (M2, Sigma), HA (3F10, Roche), Myc (9E10, Roche), beta-actin (Sigma), horseradish-peroxidase (HRP)-conjugated secondary antibodies (GE Health Care), and Alexa Fluor 488/594-conjugated secondary antibodies (Life Technologies) were purchased from the indicated sources.
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2

Culturing and Transfecting HEK 293F and PC-12 Cells

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HEK 293F cells were cultured in Dulbecco's modified Eagle's medium (DMEM, Sigma D5796) supplemented with 10% fetal bovine serum (FBS) and an antibiotic-antimycotic solution (Sigma A5955). PC-12, a rat adrenal pheochromocytoma cell line, was obtained from RIKEN Cell Bank and was cultured in DMEM supplemented with 10% horse serum, 5% FBS and the antibiotic-antimycotic solution. The vectors were transfected into HEK 293F cells and PC-12 cells using Polyethylenimine 'Max' (Polysciences) and Lipofectoamine 2000 (Life Technologies), respectively.
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3

Engineered Rex1-Luciferase and Zscan4-Gal4 ESCs

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Luciferase2 was inserted downstream of the Rex1 promoter in one of the alleles by a Cre-loxP mediated cassette exchange system based on the system we previously reported modified for manipulation of the Rex1 allele (Masui et al., 2005 (link)). Briefly, host cells were generated by electroporation of EB5 ESCs using Gene Pulser (Bio-Rad) with a linearized vector possessing a loxP-IRESneo-pA:PGKpacΔtkpA-loxPV sequence flanked by homologous arms targeting the Rex1 ORF. Then a plasmid vector possessing a translational amplifier from the 5′ UTR of the homeobox gene Gtx (super IRES) that was cut out from pGTIV3 vector (a kind gift from Dr. Joshua Brickman) (Tsakiridis et al., 2009 (link)) fused to the 5′ of Luciferase2 that was cut out from pGL4.10 vector (Promega) flanked by loxP and a mutant loxPV (Figure S2A) was co-transfected with a pCAGGS-Cre vector using Lipofectoamine 2000 (Invitrogen), followed by selection with 1 μM gancyclovir to obtain Rex1p-Luc ESCs.
Then the Rex1p-Luc ESCs were transfected with a piggyBac transposon vector coding the Zscan4c promoter (amplified from the EB5 genomic DNA) and the trans-activating domain of Gal4 (Figure 2A), together with the piggyBac vectors pPB-UAS-hCMV promoter-EGFP and pPB-H2BmCherry-IRESpac, followed by selection with puromycin to obtain Rex1p-Luc ESCs stably transfected with Zscan4p-Gal4TD, UAS-EGFP, and H2B-mCherry.
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Evaluating Pluripotency of ES Cells

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2TS22C ES cells were cultured in GMEM supplemented with 10 % Knockout Serum Replacement (KSR; Invitrogen), 1 % fetal calf serum (FCS), 1 × non-essential amino acids (Nakarai), 1 mM Sodium pyruvate (Nakarai), 10−4 M 2-mercaptoethanol and 103 U/ml of mouse LIF on gelatin coated surface. For the complementation assay, 3 × 104 2TS22C ES cells were seeded in wells of 48 well plates. The following day, cells were transfected with 1 μg of the PiggyBac Sox expression vector and 1 μg of pCAGGS-PBase [20 (link)] using Lipofectoamine 2000 (Invitrogen), and replated into four wells of a 12-well plate. Cells were selected with 10 μg/ml of Blasticidin S (Invivogen) from one to seven days after transfection. Three wells of cells were stained with Leischman stain to count the numbers of stem cell colonies. One well of cells was dissociated and 3 × 103 cells seeded into a well of a 12-well plate either in the presence or absence of 1 μg/ml of tetracycline. After six days, one-fifth of the dissociated cells were replated into a well of a 12-well plate followed by culture with tetracycline for 6 days. Stem cell colonies were scored by Leischman staining as well as re-seeding into either 12-well or 48-well plates for RNA preparation and immunostaining, respectively.
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5

Elucidating Rex Phosphorylation Dynamics

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H-7 is a protein kinase C inhibitor and has been reported to inhibit the phosphorylation of Rex [45 (link),46 (link)]. HeLa cells were seeded in 48 wells at 2 × 104 cells/250 L/well on 48-well plates After 24 h, the cells were co-transfected with 100 ng each of Renilla-WT and Firefly-PTC, and 200 ng of pME-FLAG (Mock) or pME-FLAG-Rex by Lipofectoamine2000 (Invitrogen, Thermo Fisher Scientific, Inc., Waltham, MA, USA). After 24 h, H-7 was added to a final concentration of 50 μM (20 h treatment). Similarly, H-7 was added at 40 h (4 h treatment), 42 h (2 h treatment), and at 44 h, and Luc assay was performed simultaneously with H-7-free (0 h treatment) samples.
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