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29 protocols using u87mg

1

Cytotoxicity Assay for Cancer Cell Lines

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The experiments were performed on normal and cancer cell lines, purchased from ATCC®, Washington, DC, USA (U87MG, EOC2).
U87MG cells were cultured in DMEM (Sigma-Aldrich, Weinheim, Germany), supplemented with 10% FBS and antibiotics (100 U/mL penicillin and 100 μg/mL streptomycin). EOC2 cells were cultured in DMEM, supplemented with 10% FBS. Cells were cultured in a humidified atmosphere at 37 °C, saturated with 5% CO2.
To remove the adhesive cells from the plates, we used a trypsin/EDTA solution (0.05% of trypsin/EDTA; Sigma-Aldrich, Weinheim, Germany) for U87MG, and a cell scraper for EOC2.
The cells were collected by centrifugation (125× g for 10 min) and placed in a fresh medium without antibiotics prior to treatment with the respective substance. The cells (3 × 105 cells/mL) were incubated with the drug for different time intervals in a cell incubator. At each time interval, aliquots were used for analyses.
Ascorbate was dissolved in PBS (10 mM, pH 7.4). Menadione was dissolved in dimethyl sulfoxide (DMSO; Sigma-Aldrich, Weinheim, Germany) to 10 mM stock solutions, and then several working solutions in PBS were prepared. The final concentration of DMSO in the cell suspension was below 1%. At this concentration, DMSO did not affect cell viability.
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2

TLR4 Activation in Human Tumor Cell Lines

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The human tumor cell lines SW480 (primary colon adenocarcinoma), SW620 (metastatic colon adenocarcinoma), MDA-MB-231 (metastatic breast adenocarcinoma) and U87-MG (glioblastoma) were purchased from Sigma-Aldrich. Cells were grown in two different Dulbecco’s modified essential media (DMEM high glucose for SW480 and SW620 and DMEM low glucose for MDA-MB-231 and U87-MG) (Sigma-Aldrich) supplemented with 10% FBS (Gibco) and 1% penicillin/streptomycin solution (Gibco) at 37 °C with 5% CO2 in humidified air.
To activate TLR4 cells were incubated with [1 µg/ml] LPS (E. coli 055:B5 LPS, Sigma-Aldrich) for 24 hours, washed three times with PBS and then culture medium was replaced with fresh medium supplemented with 10% certified exosomes-free serum (Gibco). After 24 hours, supernatants were collected and stored at −20 °C until use, while cells were harvested, and their proliferation/viability was determined by the trypan blue exclusion assay.
Cell homogenates were analyzed for TLR4 expression by immunoblotting and the human anti-TLR4 (1:500, Cell Signaling) and anti-β-actin (1:10,000, Sigma-Aldrich) were used as primary antibodies.
All methods of analysis were carried out in accordance with the relevant guidelines and regulation with appropriate quality control.
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3

Isolating Glioblastoma Stem Cells

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U87MG, U138MG, and T98G cells were purchased from ECACC (Sigma Aldrich, St. Louis, MO, USA) and cultured in RPMI 1640 supplemented with 10% (v/v) fetal bovine serum and 2 mM glutamine (Sigma Aldrich). GSCs were isolated from U87MG, U138MG, and T98G cells by plating 2 × 103 cells/cm2 in the selective medium DMEM/F12 (Sigma Aldrich) plus 10 ng/ml basic fibroblast growth factor (Millipore, Billerica, MA, USA), 20 ng/ml EGF (Sigma Aldrich), B27 supplement minus vitamin A (Life Technology, Carlsbad, CA, USA), and 2 mM glutamine, and culturing them for 3 weeks, at 37 °C, 5% CO2.
GSCs isolated from human post-surgical specimens and GBM tissues isolated from patients admitted at S. Raffaele Hospital (Milan, Italy) were provided by Dr R Galli. LO627 cells were cultured as previously described.39 (link)
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4

Culturing Human Cancer Cell Lines

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The human cancer cell lines breast adenocarcinoma (MCF-7), colon adenocarcinoma (Caco-2 and HT-29), and glioblastoma (U87MG) were obtained from the Sigma-Aldrich company (ECACC, Steinheim, Germany) and from the collection of the Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland. All cell lines were cultured in DMEM media supplemented with heat-inactivated fetal bovine serum and antibiotics. Cells were passaged with 0.25% trypsin-EDTA after washing with phosphate-buffered saline. All cultures were carried out at 37 °C and in a CO2 atmosphere (5%).
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5

Glioblastoma Cell Line Cultivation

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U87-MG, U251-MG, and U373-MG (Uppsala) GBM cell lines were obtained by Sigma-Aldrich (St. Louis, MO, USA) (HPA Culture Collections). The A172 GBM cell line was obtained by American Type Culture Collection (ATCC, Manassas, VA, USA). Cell lines were not used beyond passage 20. U251 Cells were cultivated in Roswell Park Memorial Institute (RPMI) 1640 medium (Biochrom, Berlin, Germany) containing 10% fetal calf serum (FCS; Biochrom, Berlin, Germany), 100 IU/ml penicillin, and 100 µg/ml streptomycin (Biowest, Nuaillé, France). All other cells and cell lines were cultivated in Dulbecco’s Modified Eagle Medium (DMEM) low glucose (Biowest, Nuaillé, France) containing 10% FCS (Biochrom, Berlin, Germany), 100 IU/ml penicillin, and 100 µg/ml streptomycin (Biowest, Nuaillé, France). Primary GBM cells derived from a primary GBM tumor biopsy were obtained from the University Hospital Cologne, genetically characterized and cultured as previously described (Haas et al. 2018 (link)).
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6

Glioblastoma Cell Lines and Astrocyte Cultures

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The GBM cell lines U87MG, LN229, U373, U343, U251 and LN18 and the normal human astrocytes SVG [48 (link)] and NHA-hTERT-E6/E7 [49 (link)] were cultured in Dulbecco's Modified Eagle's Medium (DMEM) and 10% FBS at 37oC and 5% CO. U343, LN18, NHA-hTERT-E6/E7 and SVG were obtained from the laboratory of Dr. A. Guha, University of Toronto, Canada. U87MG, T98G, U251, LN229 and U373 were obtained from Sigma Aldrich (Saint Louis, Missouri, USA). Over expression construct of DDK-tagged GNG4 was purchased from Origene along with corresponding vector control pCMV-Entry. RAS V12 over expression construct was a kind gift from Dr. Annapoorni Rangarajan (IISc).
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7

Cell Culture Protocols for Neuroblastoma, Glioblastoma, and MDCK

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Human neuroblastoma (neuron like, SK-N-SH) and human glioblastoma (astrocyte like, U87-MG) cells were purchased from Sigma-Aldrich and maintained in Eagle minimal essential medium (EMEM; Lonza, Breda, the Netherlands) supplemented with 10% fetal bovine serum (FBS; Sigma-Aldrich, St. Louis, MO, USA), 100 IU/ml penicillin (Lonza, Basel, Switzerland), 100 μg/ml streptomycin (Lonza), 2 mM glutamine (Lonza), 1.5 mg/ml sodium bicarbonate (Cambrex, Wiesbaden, Germany), sodium pyruvate (Thermo Fisher Scientific, Waltham, MA, USA) and 1× (0.1 mM) nonessential amino acids(MP Biomedicals Europe, Illkirch, France). As a control cell line, we have included Madin-Darby canine kidney (MDCK) cells, since these cells are extensively used for influenza virus propagation. MDCK cells were maintained in EMEM supplemented with 10% FBS, 100 IU/ml penicillin, 100 μg/ml streptomycin, 2 mM glutamine, 1.5 mg/ml sodium bicarbonate, 1 mM, 10 mM HEPES (Cambrex), and 1× (0.1 mM) nonessential amino acids.
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8

GBM Cell Lines Overexpressing Tctex1

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Both GBM cell lines used in this study (U87-MG and U373-MG) are commercially available. The U87-MG cells were purchased from Sigma-Aldrich, St. Louis, MO, USA (Cat. 89081402); U373-MG were a kind gift from Prof. K. Lamszus (University Medical Center Hamburg-Eppendorf, Germany). Both cell lines were cultured in Dulbecco’s Modified Eagle Medium (Gibco® DMEM; ThermoFisher Scientific, Rockford, IL, USA) supplemented with 10% fetal calf serum (FCS; Pan Biotech, Aidenbach, Germany), 1% Penicillin-Streptomycin and 1% non-essential amino acids (both from Sigma-Aldrich). The cells were transfected with pcDNA3.1(+) Tctex1 or pcDNA3.1(+) plasmids using Lipofectamine®2000 (Life Technologies, ThermoFisher Scientific) in Opti-MEM® medium (Gibco, ThermoFisher Scientific), according to the manufacturer’s protocol. Transfected cells were selected with 400 µg/mL G418 (InvivoGen, Toulouse, France) and then maintained in cell culture medium containing 200 µg/mL G418.
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9

Silencing YKL-40 in Glioblastoma U87-MG Cells

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Human GBM cell lines U87-MG were purchased from American Type Culture Collection (ATCC). Three different lentiviral plasmids (pLKO.1, Sigma-Aldrich) containing shRNA sequences (Sigma-Aldrich) to YKL-40 gene were used to generate a stable YKL-40 silenced U87-MG cell line using the packaging cell line HEK-293T [16 (link)]. HEK-293T cells were transfected by JetPEI and pLKO-YKL-40 or empty pLKO plasmids (Invitrogen, Life Technologies). Lentivirus particles were added to U87-MG, and after 48 h infected cells were selected with puromycin (1μg/mL) and YKL-40 silencing was controlled by qPCR and western blotting analysis for each clones (data not shown).
Two derived cell lines from U87-MG cells were used in this study: human empty vector pLKO control cells and sh YKL-40 cells. Human Brain Microvascular Endothelial Cells (HBMECs, Lonza) were cultured as described previously [16 (link)].
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10

Culturing Human Glioblastoma Cell Lines

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Human GBM cell lines, U87-MG (ATCC) and U251 (NCI), were cultured in 1g/L glucose Dulbecco's Modified Eagle's Medium (DMEM, Sigma) supplemented with 10% fetal calf serum (Eurobio), 1 µg/mL penicillin/streptomycin (P/S, Sigma) and 2 mM glutamine (Gln, Sigma) at 37°C in wet atmosphere.
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