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21 protocols using penicillin

1

Culturing Influenza Virus in MDCK Cells

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Madin-Darby canine kidney cells were purchased from the Pasteur institute of Iran, Tehran. The cells were grown at 37 °C in 5% CO2 with 85% of humidity in DMEM(BIO-IDEA), supplemented with 10% of Fetal Bovine serum (DNABIOTECH) and 1% of penicillin (BIO-IDEA). The influenza virus vaccine strain, A/Puerto Rico/8/1934 (H1N1) (ATCC VR-897™), sourced from the Influenza Department at the Pasteur Institute of Iran, was cultured in MDCK cells. The virus was cultured in MDCK cells with the addition of 1 μg/ml of trypsin-Tosylamide Phenylethyl Chloromethyl Keton-treated Trypsin (TPCK) from Sigma, USA. After a 48-hour incubation period, the supernatant containing the virus was collected and the Reed and Muench formula was used for virus titration [24 (link)].
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2

Culturing HepG2, LX2, and HUVEC Cells

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All cell types, including HepG2, LX2, and HUVECs, were purchased from the Pasture Institute (Iran, Tehran). HepG2 and LX2 were cultured in Roswell Park Memorial Institute (RPMI) 1640 Medium (Gibco, USA), and HUVECs were grown in Dulbecco's Modified Eagle Medium/Nutrient Mixture F-12 (DMEM/F12, Gibco, USA) in T-75 flasks. Each medium was supplemented with 1× Glutamax (Bioidea, Iran), 10% fetal bovine serum (FBS) (Gibco, USA), penicillin 100 U/ml, and streptomycin 100 μg/ml (P/S; Bioidea, Iran). After 70%–80% confluency, the cells were trypsinized with 0.05% trypsin/EDTA (Shellmax, China) and were ready for the experiment. All cells were incubated at 37°C with 5% carbon dioxide (CO2).
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3

Fibroblast Cell Culture Protocol

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The normal mouse skin fibroblast line (c147) employed in this investigation were obtained from a National Cell Bank of Iran, Pasteur Institute of Iran, Tehran, Iran and were cultured according to the source's guidelines. Fibroblast cells were cultured in Roswell Park Memorial Institute (RPMI) 1640 (Biosera, France) + fetal bovine serum (FBS) 10% (Gibco, USA) medium, 100 U/mL penicillin and 100 µg/mL streptomycin (Bio-Idea, Iran). Cells were kept under standard culture conditions at 37°C and 5% CO2. All cells were used between passages 5 and 6. Trypsin 0.025%-ethylenediaminetetraacetic acid 0.02% (Sigma-Aldrich, USA) in phosphate-buffered saline was used to separate fibroblast cells from the flasks.
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4

Chondroitin Sulfate Synthesis Regulation

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Dulbecco's Modified Eagle Medium nutrient mixture‐F12 (DMEM/F12), antibiotics (penicillin, streptomycin) and trypsine‐EDTA were obtained from Bioidea (Tehran, Iran). Fetal bovine serum (FBS) was purchased from Gibco (Invitrogen, Carlsbad, CA, USA). The following chemicals were obtained from Sigma Aldrich (St Louis, MO, USA): SB239063, SB431542, apocynin, diphenyleneiodonium chloride (DPI), N‐acetyl‐L‐cysteine (NAC), bosentan, endothelin‐1. Anti‐rabbit immunoglobulin‐G (IgG)–horseradish peroxidase (HRP) antibody obtained from Sigma Aldrich. Human recombinant transforming growth factor‐β, Phospho‐p38 MAPK (Thr180/Tyr182) Antibody and anti‐phospho‐Smad2 (Ser245/250/255) were purchased from Cell Signaling Technology (Beverly, MA, USA). Glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) rabbit monoclonal IgG antibody was obtained from Abcam (Cambridge, MA, USA). Primers (forward and reverse) for C4ST‐1, ChSy‐1 and GAPDH were purchased from Takapouzist (Tehran, Iran).
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5

Mouse Mammary Tumor Cell and Macrophage Culture

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New Zealand White Rabbits and 6-8-week-old BALB/c mice were provided by the Royan institute (Isfahan, Iran). All animal experiments were carried out based on Iran's Guidelines for Care and Use of Laboratory Animals during the investigation, which was performed in the experimental animal section of Isfahan University of Medical Science(20 (link)). Ethical approval for this study was obtained from the institutional review boards at the Isfahan University of Medical Science (Ethic No. IR.MUI.RESEARCH.REC.1398.668). Prior to the experiment, the mice were housed for at least a week. In addition, tubes, boxes, and climbing structures were provided in order to enrich, which is renewed once a week.
The 4T1 mouse mammary tumor cell line and murine monocyte/macrophage cell line J774 were purchased from Pasture Institute (Iran) and were cultured in RPMI-1640 (Bio-idea, Iran), supplemented with 10% fetal bovine serum (FBS, BioIdea, Iran), 100 U/mL penicillin, and 100 mg/mL streptomycin (Bio-idea, Iran) in a humidified 5% CO2 incubator at 37 °C.
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6

PD-L1 Expression and Modulation in Leukemic Cell Lines

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HL-60 and THP-1 cell lines were purchased from Pasteur Institute (Tehran, Iran) and were cultured in Roswell Park Memorial Institute (RPMI) 1640 with 20% heat-inactivated FBS and 1% antibiotics (100 U/ml penicillin and 100 µg/ml streptomycin) (Bio idea, Iran). THP-1 is of monocytic origin and representative of AML M-5 (https://en.wikipedia.org/wiki/THP-1_cell_line) while HL-60 is representative of promyelocytic leukemia M-2 and M-3 (https://en.wikipedia.org/wiki/HL60). According to previous studies, THP-1 and HL-60 cell lines express PD-L1 which can be overexpressed by PMA stimulation [9 (link), 10 (link)]. 1 × 106 of each cell line were seeded in each well of the cell culture plate and stimulated with 50 ng/ml phorbol 12-myristate 13 acetate (PMA, Sigma-Aldrich, St Louis, MO, USA) to increase PD-L1 expression. We divided each cell line into two groups including test and control. Both groups were initially stimulated with PMA to express PD-L1. After 24 h of incubation at 37ºC and 5% CO2, recombinant human PD-1 (CD279)-Fc chimera (carrier-free) (Biolegend, UK) was added to the medium of test group cells in the concentration of 80 ng/ml while the control group cells were not treated. In order to find the effect of PD-L1 stimulation.
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7

Establishing Human ESCC YM-1 Cell Line

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Human ESCC YM-1 cell line has already been established in our laboratory at Golestan University of Medical Sciences.18 (link)
Cells were cultured as a monolayer in high glucose DMEM/F12 (BioIdea, CN:1027) supplemented with 10% fetal bovine serum (FBS) (BioIdea, CN:10270-106), 100 IU/mL penicillin and 100 μg/mL streptomycin (BioIdea, CN:1036) at 37°C in a humidified 5% CO2 incubator. The medium was changed every 3 days and cells were passaged to another flask every week.
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8

Culturing HT-29 Colon Cancer Cells

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HT-29 colon cancer cells were provided by the Pasteur Institute of Iran. Cells were cultured in Dulbecco’s modified eagle medium (DMEM) high glucose (Bioidea, Iran) supplemented with 10% fetal bovine serum (FBS, Bioidea, Iran), 100 U/mL penicillin, and 100 μg/mL streptomycin (Bioidea, Iran) and were maintained in a humidified incubator at 37 °C with 5% CO2.
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9

Sebacic Acid-Glycerol-PLA Scaffold Development

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In this study, Sebacic acid (99%, Merck, Germany), Glycerol (99%, Merck, Germany), Poly Lactic Acid (PLA) (Mw = 200 kDa, Sigma-Aldrich), chloroform (Sigma-Aldrich), Dimethylformamide (DMF) (Merck, Germany), dimethyl thiazole diphenyltetrazolium bromide (MTT, Sigma-Aldrich), sodium citrate (Vacuette, Switzerland), Lipopolysaccharide (LPS, Sigma-Aldrich), dimethyl sulfoxide (DMSO) (Merck, Germany), Dulbecco’s Modified Eagle Medium (DMEM-high and F12-DMEM), fetal bovine serum (FBS), streptomycin, penicillin (Bioidea, Iran), and phosphate buffered saline tablets (PBS, Sigma-Aldrich) were used.
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10

Cultivation of Human Colorectal Cancer Cell Lines

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HCT116 and SW48 human colorectal cancer cell lines were purchased from the National Cell Bank, Pasteur Institute of Iran (Tehran, Iran). HCT116 cell line was cultured in Dulbecco’s modified Eagle’s medium (DMEM F-12 + Glutamax) (Bio-idea, Iran) (Cat No. BI 1027) and SW48 Cell line was cultured in Roswell Park Memorial Institute medium (RPMI 1640+Glutamax) (Bio-idea, Iran) (Cat No. BI 1031), they were supplemented with 10% fetal bovine serum (FBS) (Gibco) (Cat No. 10270-106) and Pen Strep (Penicillin Streptomycin) (100x) (10,000 Units/ml Penicillin, 10,000 μg/ml Streptomycin) (Bio-idea, Iran) (Cat No. BI 1036).
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