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Dm4000b

Manufactured by Leica Microsystems
Sourced in Germany, United States

The DM4000B is a biological microscope designed for laboratory use. It features a transmitted and reflected illumination system, allowing for observation of both transparent and opaque samples. The microscope provides high-quality optical performance and is suitable for a range of applications in research and clinical settings.

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62 protocols using dm4000b

1

Alkaline Comet Assay for Sperm DNA Damage

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The alkaline comet assay performed according to the modified OECD TG 489 protocol. Triplicate slides were prepared per treatment. Sperm sample (20 μL) containing 5 × 105 sperm per mL were suspended in 180 μL of 0.5% (w/v) low melting agarose and 55 μL was immediately pipetted onto a comet slide. These slides were incubated for 30 min. The slides were immersed in 250 mL chilled lysis solution with 10 mM DTT for 1 h in a refrigerator. After lysis, the slides were washed twice with DW for 10 min. The slides were then incubated in alkaline buffer (0.3 M NaCl, 1 mM EDTA) for 20 min in the dark at 4°C. Electrophoresis as performed at 21 V and 300 mA for 20 min. After that, the slides were washed twice with DW for 5 min. The slides were then immersed for 5 min in ethanol. Slides were airdried at room temperature in the dark. Immediately before scoring, slides were stained with 55 μL SYBR green (1 : 10,000 dilution of liquid concentrate). Slides were analyzed using a fluorescence microscope (DM-4000B, Leica Microsystems) at 40× magnification. For each sample, 50 comets per slide were analyzed, with three slides scored per sample. The percentage of tail DNA and OTM were measured according to the DNA damage degree using computer software (Komet 5.5, Kinetic Imaging Liverpool) with a fluorescence microscope (DM-4000B, Leica Microsystems).
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2

Intestinal Morphology Analysis in Chickens

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To investigate the intestinal morphology of the selected chickens, 3 cm segments from the duodenum, jejunum, and ileum were removed carefully without chyme and were fixed in a 4% paraformaldehyde solution. Then, the segments were successively placed into an ascending gradient of ethanol for dehydratation. After xylene clearing, these samples were embedded in paraffin wax and processed into slices followed by hematoxylin-eosin staining. The villus height and crypt depth were observed and measured under a positive fluorescence microscope (DM4000B, Leica Microsystems, Wetzlar, Germany), and the ratio of the villus height to crypt depth (VCR) was calculated.
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3

Histomorphometric Analysis of Chick Tissues

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Tissue histopathology and intestinal morphology of chicks from both groups were determined as previously described [28 (link),29 (link)]. Briefly, small segments of liver, spleen, and middle jejunum were fixed in 10% buffered formaldehyde (pH 7.2) and dehydrated via an ascending ethanol gradient. After xylene clearing, the samples were embedded in paraffin and processed into 5-µm-thick slices followed by mounting and hematoxylin-eosin (HE) staining. Inflammatory infiltration and general damage in the liver and spleen, as well as the villus height (VH) and crypt depth (CD) of the jejunum, were observed and measured under a fluorescence microscope (DM4000B, Leica Microsystems, Wetzlar, Germany). The ratio of the villus height-to-crypt depth (VCR) was also calculated. Histopathological images of liver or spleen were scored by a pathology professional who did not know the experimental group according to the number of inflammatory cell nodules and the degree of cell degeneration and necrosis. The score from normal to severe lesions was 0~4.
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4

Histological Kidney Analysis: PAS and IHC

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The kidneys were collected and fixed in 10% formalin for Periodic Acid-Schiff (PAS) and immunohistochemistry (IHC) staining. Tissue specimens were embedded in paraffin and sliced into 4-µm-thick sections. PAS staining was used for kidney histological observation and evaluation. IHC was employed for determining the expression of apoptosis protein. The observation was conducted using a light microscope (DM 4000B, Leica Micro systems, Buffalo Grove, IL, USA). Image-Pro Plus 6.0 software was utilized for the evaluation of protein expression.
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5

Microwell Array Imaging Protocols

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For experiments that did not require full array imaging, manual imaging was used. The array of microwells was manually imaged in 3 locations per array on an epifluorescent microscope (DM 4000B, Leica Microsystems GmbH, Wetzlar, Germany) at 10× magnification (Objective Floutar 10×/0.3, Leica Microsystems GmbH). Excitation light sources were produced with a xenon lamp and passed through a quad-band filter set for specific excitation bandwidths. Images were captured using an Retiga 2000R digital camera (QImaging, Canada). The capture was controlled using the ImagePro 6.3 software (Media Cybernetics Inc.). Brightfield, FITC and Cy5 fluorescent images were captured.
Full array imaging was achieved by placing the array on an automatic slide scanning system, Zeiss AxioImager DIC/Fluorescence Microscope (Neuroscience Microscopy Service, Stanford, CA, USA). One hundred and eight, 0% overlap regions of the array were imaged at 10×. Each location was imaged for DIC, FITC (Zeiss Filter Set 38HE: FITC/eGFP/Alexa 488) and Cy5 (Zeiss Filter Set 50: Cy5/Alexa647) fluorescence. The exposure was set to cover 70% of the dynamic range of the CCD (Peltier cooled, Sony ICX 285 sensor).
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6

Immunostaining and Analysis of Gastrocnemius Muscle Fibers

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Cryosections of the gastrocnemius were immunostained and analysed as described previously.17 Briefly, cryosections were cut in section at 20‐μm thickness, fixed with 4% paraformaldehyde for 15 min and blocked in PBS/10% bovine serum albumin (BSA) for 1 h at room temperature. Sections was incubated overnight at room temperature with a rabbit anti‐laminin antibody (Sigma‐Aldrich) diluted 1:250 in PBS/10% BSA, washed with PBS/0.025% Triton X‐100, and incubated in a goat anti‐rabbit Alexa Fluor 488 nm labelled secondary antibody (Invitrogen) diluted 1:500 in PBS/10% BSA. Sections were coverslipped with ProLong Gold Antifade media with DAPI (Invitrogen). Fibre area was measured in images that were acquired on a microscope (DM 4000 B, Leica Microsystems). Images were processed using NIH ImageJ software.
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7

Polarized Optical Microscopy Analysis

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All samples were imaged before and after relaxation testing in an optical microscopy (DM 4000B/ Leica Microsystems, Wetzlar, Germany) under transmittance polarized illumination and representative images were acquired from different locations under 50×, 100× and 200× nominal magnifications.
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8

Histological Evaluation of Arterial Wall

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HE staining (Beijing Century Heli Biotechnology Co., Ltd., Beijing, China) was performed to evaluate the pathological and morphological changes in the arterial wall tissue. Fixed aortic specimens were dehydrated, embedded in paraffin, sectioned (6 µm) and stained with HE according to previously published methods (28 (link)). The tissue sections were deparaffinized using xylene, hydrated through a series of graded ethanol and stained with HE. The sections were subsequently dehydrated through a series of graded ethanol, cleared in xylene and mounted using neutral resin. The pathological and morphological changes of the arterial wall tissue were observed under an optical microscope (DM4000B, Leica Microsystems, Wetzlar, Germany).
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9

Neuronal Cell Loss in Ischemic Cortex

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At 1, 3, and 7 d of reperfusion, 5 rats from each group were randomly chosen and anesthetized with 1% pentobarbital sodium (50 mg/kg, intraperitoneally). Brains were rapidly removed and fixed in 4% paraformaldehyde for 72 h and embedded in paraffin following standard methods. The paraffin-embedded blocks were cut into a series of 5 μm thick slices that contained damaged cerebral cortex and striatum and stained with 1% toluidine blue (Servicebio Biotechnology, Ltd., Wuhan, China). The morphology of neurons and staining of Nissl bodies in the ischemic cortex were observed (×400 magnification) under a light microscope (DM4000B, Leica Microsystems Inc., Germany). Three random fields were chosen in each slice. An investigator blinded to the experimental design analysed the slides. The number of neurons stained positively by Nissl was counted to evaluate neuronal cell loss in the ischemic cortex.
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10

Histological Assessment of Cardiac Hypertrophy

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LV samples were fixed in formalin, sectioned in 4 μm thick slices (Electronic Rotary Microtome HM 340E, Microm, Thermo Fisher Scientific, Waltham, MA, USA), and stained with haematoxylin and eosin (H&E staining) for light microscope visualization (DM4000B, Leica Microsystems, Wetzlar, Germany). For myocardial hypertrophy assessment, the transversal diameter of cardiomyocytes was double-blindly measured in 70 cells randomly selected from eight to ten microscopic fields (Leica Application Suite Software, Leica Microsystems). To assess fibrosis, Sirius red staining was performed according to standard protocol.
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