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20 protocols using cm 12 electron microscope

1

Transmission Electron Microscopy of LBOs

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Transmission Electron Microscopy (TEM) was performed at the NYU Langone Medical Center Microscopy Core. LBOs were fixed with 2.5% glutaraldehyde in 0.1M sodium cacodylate buffer (pH7.2) for 2 hours and post-fixed with 1% osmium tetroxide for 1.5 hours at room temperature, then processed in a standard manner and embedded in EMbed 812 (Electron Microscopy Sciences, Hatfield, PA). Semi-thin sections were cut at 1 mm and stained with 1% Toluidine Blue to evaluate the quality of preservation and find the area of interest. Ultrathin sections (60 nm) were cut, mounted on copper grids and stained with uranyl acetate and lead citrate by standard methods. Stained grids were examined under Philips CM-12 electron microscope and photographed with a Gatan (4k ×2.7k) digital camera (Gatan, Inc., Pleasanton, CA).
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2

Purification and Visualization of SIV Capsid

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SIV capsid was purified from the PEG precipitation step through immunoprecipitation with an SIV p27-specific antibody and EVs by CD63/CD81 bead purification. The final product was allowed to adsorb to glow-charged carbon-coated 400-mesh copper grids for 3 min and then stained with 2% (wt/vol) uranyl acetate in water. TEM images were obtained with a Philips CM12 electron microscope at 80 kV and captured on a Gatan Orius camera (2,000 by 2,000 pixels) with Digital Micrograph software (Gatan, Pleasanton, CA).
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3

Ultrastructural Mitochondrial Analysis

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Cultured cells were fixed in 0.1 M sodium cacodylate buffer (pH 7.2) containing 2.5% glutaraldehyde and 2% paraformaldehyde for 2 hours and post-fixed with 1% osmium tetroxide for one hour, then block stained in 1% aqueous uranyl acetate, dehydrated using a gradient of ethanol and embedded in EMbed 812 (Electron Microscopy Sciences, Hatfield, PA). Ultrathin sections (60 nm) were cut, mounted on copper grids and stained with uranyl acetate and lead citrate. Stained grids were examined under Philips CM-12 electron microscope and photographed with a Gatan (4k x 2.7k) digital camera. Images were analyzed in ImageJ (RRID:SCR_003070) by measuring the largest visible mitochondrial dimension (length or width) for each mitochondrion present in randomly selected images.
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4

Ultrastructural Analysis of Cultured Cells

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Cultured cells were treated with EBSS for 1hr before fixed in 0.1M sodium cacodylate buffer (pH 7.2) containing 2.5% glutaraldehyde and 2% paraformaldehyde for 2 hours, and then post-fixed with 1% osmium tetroxide and 1% potassium ferrocyanide for one hour at 40°C, and later block stained in 0.25% aqueous uranyl acetate, processed in a standard manner and embedded in EMbed 812 (Electron Microscopy Sciences, Hatfield, PA). Ultrathin sections (60 nm) were cut, mounted on copper grids and stained with uranyl acetate and lead citrate. Stained grids were examined under Philips CM-12 electron microscope and photographed with a Gatan (4k x 2.7k) digital camera.
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5

Ultrastructural Analysis of TA Muscles

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Transmission electron microscopy was performed on TA muscles fixed in 2.5% paraformaldehyde (PFA; Electron Microscopy Sciences), 2.5% glutaraldehyde (Electron Microscopy Sciences), and 50 mM CaCl2 (Sigma-Aldrich) in cacodylate buffer (0.1M, pH = 7.4; Sigma-Aldrich). Muscles were then postfixed in 1% osmium tetroxide in 0.1M cacodylate buffer for 1 hour at 4°C and incubated with 5% uranyl acetate for 2 hours at 4°C. The samples were embedded in Epon 812. Ultrathin sections were cut at 70 nm and contrasted with uranyl acetate and lead citrate; they were finally observed with a Philips CM12 electron microscope equipped with a Gatan OneView Camera (Gatan).
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6

Ultrastructural Imaging of Hippocampus

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Ultrathin-sections spanning the dorsal or ventral hippocampus were counterstained with uranyl acetate before viewing under the electron microscope (JEOL1200XL). Digitized images were captured using the AMT camera system, consisting of a 1.2 megapixel Hamamatsu CCD camera (Boston, MA) attached to JEOLXL1200 electron microscope, at magnifications ranging from 25,000x to 60,000x. Alternatively, images were digitally captured, using a Phillips CM12 electron microscope with Gatan 4 megapixel digital camera at a magnification of 25,000x.
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7

Electron Microscopy Specimen Preparation

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BMDM were fixed in 0.1 M sodium cacodylate buffer (pH 7.4) containing 2.5% glutaraldehyde and 2% paraformaldehyde for 2 h and post-fixed with 1% osmium tetroxide and 1% potassium ferrocyanide for 1 h at 4 °C, then block stained with 0.01% thiocarbohydrazide following 0.25% aqueous uranyl acetate. The cells were embedded in EMbed 812 (Electron Microscopy Sciences, Hatfield, PA). Ultrathin sections (60 nm) were cut, mounted on copper grids and stained with uranyl acetate and lead citrate. Stained grids were examined under Philips CM-12 electron microscope and photographed with a Gatan (4k × 2.7k) digital camera.
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8

Exosome Morphology and Immune-Electron Microscopy Analysis

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For exosome morphology analysis, 5 μl isolated exosome were put on glow discharged carbon coated 400 mesh copper/rhodium grids and stained with 1% uranyl acetate aquous solution. For whole mount immune-electron microscopy, deposit 5μl of 2% paraformaldehyde fixed exosomes on glow discharged formvar-carbon coated copper grids, and let it adsorbed for 20min. After washing with PBS, the grids were incubated with 50mM glycine/PBS for 5min, blocked with 1% coldwater fish skin gelatin (Sigma) for 10min, then incubate with primary antibodies (anti-TSG101, Abcam) in blocking solution for 2 hours at room temperature. Following washing with PBS, gold conjugated secondary antibodies (15nm protein A- gold, Cell Microscopy Center, University Medical Center Utrecht, 35584 CX Utrecht, The Netherlands; 12nm colloidal gold-AffiniPure goat anti-rabbit IgG (H+L), Jackson ImmunoReasearch Laboratories, Inc., West Grove, PA) were applied in the blocking buffer for 1 hour. After washing with PBS, the grids were fixed in 1% glutaraldehyde in PBS for 5min, washed with water, contrasted and embedded in a mixture of 3% uranyl acetate and 2% methylcellulose in a ratio of 1 to 9. All stained grids were examined under Philips CM-12 electron microscope and photographed with a Gatan (4kx2.7k) digital camera (Gatan Inc., Pleasanton, CA)34 (link).
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9

Ultrastructural Analysis of Intestinal Organoids

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Intestinal organoids at day 3 were fixed with 2.5% glutaraldehyde, 2% paraformaldehyde in 0.1 M sodium cacodylate buffer, pH 7.2, for 2 h and postfixed with 1% osmium tetroxide for 1.5 h at room temperature, then processed in a standard manner and embedded in EMbed 812 (Electron Microscopy Sciences). Semithin sections were cut at 1 mm and stained with 1% toluidine blue to find the structure of interests. Then ultrathin sections (60 nm) were cut, mounted on 200-mesh copper grids, and stained with uranyl acetate and lead citrate. Stained grids were examined under Philips CM-12 electron microscope and photographed with a Gatan (4k × 2.7k) digital camera. To quantify mitochondria, at least 20 epithelial cells in each organoid were observed, and mitochondria were classified as type 1 (mitochondria whose cristae are maintained), type 2 (mildly swollen and a moderate decrease in the number of visible cristae), and type 3 (severely swollen and >70% of cristae are missing, or highly dysmorphic electron dense mitochondria).
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10

Transmission Electron Microscopy of LBOs

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Transmission Electron Microscopy (TEM) was performed at the NYU Langone Medical Center Microscopy Core. LBOs were fixed with 2.5% glutaraldehyde in 0.1M sodium cacodylate buffer (pH7.2) for 2 hours and post-fixed with 1% osmium tetroxide for 1.5 hours at room temperature, then processed in a standard manner and embedded in EMbed 812 (Electron Microscopy Sciences, Hatfield, PA). Semi-thin sections were cut at 1 mm and stained with 1% Toluidine Blue to evaluate the quality of preservation and find the area of interest. Ultrathin sections (60 nm) were cut, mounted on copper grids and stained with uranyl acetate and lead citrate by standard methods. Stained grids were examined under Philips CM-12 electron microscope and photographed with a Gatan (4k ×2.7k) digital camera (Gatan, Inc., Pleasanton, CA).
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