The largest database of trusted experimental protocols

113 protocols using phosflow lyse fix buffer

1

Rapid RBC Lysis and Leukocyte Fixation

Check if the same lab product or an alternative is used in the 5 most similar protocols

Timing: ∼15 min incubation for simultaneous red blood cell (RBC) lysis and leukocyte fixation; ∼25 min washes

After incubation with the antibodies against surface markers and FVS575V, add 2 mL of BD Phosflow™ Lyse/Fix Buffer to the tubes with 100 μL of blood (unstained cells, single-stain controls and FMO controls) and 4 mL to the tubes with 200 μL of blood.

Vortex the tubes or pipet the blood/buffer solution up and down 5 times very gently to avoid spills.

Incubate at room temperature for 15 min to permit complete RBC lysis and leukocyte fixation.

Spin down the tubes at 500 g and RT for 7 min, and aspirate the supernatants.

Homogenize cell pellets by flicking the bottom of the tubes or gently vortexing. Then, wash the cells with 2 mL of BD Pharmingen™ Stain Buffer (FBS) by centrifugation at 500 g and RT for 7 min.

Repeat step 18 once.

CRITICAL: Adding a volume of BD Phosflow™ Lyse/Fix Buffer working solution that is 20 times greater than the blood volume is important for proper RBC lysis.

Pause point: After RBC lysis/cell fixation and washes, the cells can be stored for 16–24 h at 4°C in 200 μL of BD Pharmingen™ Stain Buffer (FBS). However, loss of fluorescence signal might be observed with prolonged storage (Diks et al., 2019 (link)).

+ Open protocol
+ Expand
2

Murine and Human Lymphocyte Activation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Murine splenocytes or pLN were isolated as described above. Isolated leukocytes were resuspended in complete RPMI medium (10% fetal bovine serum (FBS) in RPMI medium) containing 0, 1, 10 or 100 ng/ml murine IL-2 (Peprotech). Stimulation was performed at 37 °C for 30 mins. Stimulation was terminated by the addition of 1X BD PhosflowTM Lyse/Fix Buffer (BD Bioscience) at 37 °C for 10 mins. Permeabilization was performed using Perm Buffer III (BD Bioscience) on ice for 30 mins. Cells were then washed 3 times with staining buffer to completely remove traces of Perm Buffer III before proceeding to stain with rat anti-CD4 (RM4–5, BD Bioscience), rat anti-CD25 (7D4, eBioscience), rat anti-Foxp3 (FJK-16s, eBioscience) and anti-pSTAT5 (pY694) (BD Bioscience) antibodies for 1 hr. Human peripheral blood mononuclear cells (PBMCs) were obtained from blood of healthy donors using Ficoll-Plaque (GE Healthcare)67 (link). Stimulation of PBMCs was done as above except that human IL-2 (Peprotech) was used and stimulation was done at 37 °C for 15 mins instead. Staining was done using mouse anti-human CD3 (UCHT1, BD Bioscience), mouse anti-human CD4 (SK3, BD Bioscience), mouse anti-human CD45RA (HI100, eBioscience), rat anti-human Foxp3 (PCH101, BD Bioscience) and mouse anti-pSTAT5 (pY694, BD Bioscience) antibodies for 1 hr.
+ Open protocol
+ Expand
3

Phosphorylation of CREB/ATF-1 in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were suspended at 106 cells/ml in cRPMI and incubated for 1 hour at 37°C with 20 μM ICE compounds or forskolin (positive control). Negative control samples were treated with DMSO at equal volume. Cells were fixed with 20x volume of pre-warmed 1x solution BD PhosflowTM Lyse/Fix Buffer (cat. 558049), incubated at 37°C for 10 minutes, permeabilized with BD PhosflowTM Perm buffer II (cat. 558052), and incubated on ice for 30 minutes. Permeabilized cells were then washed and stained with BD Phosflow™ Alexa Fluor® 488 Mouse Anti-CREB (pS133) / ATF-1 (pS63) clone J151-21 (cat. 558435) according to the manufacturer's instructions.
+ Open protocol
+ Expand
4

Phenotypic Analysis of Peripheral Blood Lymphocytes in HAM/TSP

Check if the same lab product or an alternative is used in the 5 most similar protocols
For analysis of peripheral blood lymphocyte populations, EDTA‐treated whole blood of HAM/TSP patients and healthy volunteers (HVs) were stained with CD3, CD4, CD8, CD14, CD19, CD25, CD27, CD45, CD45RA, CD45RO, CD56, CD95, CD122 (clone Mikβ2 and Mikβ3), CD197 (CCR7), CD244 (all from BD Biosciences), CD279 (PD‐1; BioLegend), and Tim‐3 (R&D Biosystems). Mikβ1 and Mikβ3 identified noncompeting epitopes on the IL‐2/IL‐15Rβ, but Mikβ1 and Mikβ2 appeared to recognize the same epitope or very closely related epitopes on the β chain.21, 25 Tax 11‐19/HLA‐A201 tetramer was provided by National Institute of Allergy and Infectious Diseases Major Histocompatibility Complex Tetramer Core Facility. CMV pp65/HLA‐A201 tetramer (Beckman Coulter) was used as control. For detection of phosphorylated STAT5 (pSTAT5), EDTA‐treated whole blood were incubated for 15 min at 37°C and lysed with BD PhosflowTM Lyse/Fix buffer (BD Biosciences). After washing and permeabilization with cold 90% methanol on ice for 30 min, the cells were stained with antibodies for CD3, CD4, CD8, and pSTAT5 (all from BD Biosciences). CD107a mobilization assay was performed as previously described.20 All flow cytometric analyses were performed using a FACSCalibur or LSR II (both from BD Biosciences). The data were analyzed using FlowJo 10.2 software (FlowJo LLC).
+ Open protocol
+ Expand
5

Neutrophil Oxidative Burst and SYK Phosphorylation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Neutrophils were stimulated as described above for the examination of neutrophil oxidative burst with the exception that the stimulation was stopped after 5 min at 37°C by fixation with pre-warmed BD PhosflowTM Lyse/Fix Buffer at 37ºC for 10 min. Cells were permeabilized with BD PhosflowTM Perm Buffer II on ice for 30 min and then stained with Alexa Fluor® 488 conjugated anti-phospho SYK antibody (pY348) at RT for 1 hr before flow cytometry analysis. All the above reagents were purchased from BD Biosciences (San Jose, CA, USA).
+ Open protocol
+ Expand
6

Phosflow-based Phosphoprotein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phosflow Lyse/Fix buffer, Phosflow Perm/Wash Buffer Ι and Stain Buffer were purchased from BD Pharmingen (San Diego, CA). Primary fluorophore-conjugated antibodies specific to phosphorylated proteins: mouse anti-p38 MAPK (pT180/pY182) Alexa 647 (cat. #612595) and mouse anti-p44/42 MAPK(pT202/pY204) Alexa 647 (cat. #612593), mouse IgG1 Alexa 647 (cat. #557783) were purchased from BD Pharmingen (San Diego, CA); mouse antibody against phosphorylated JNK (T183/Y185) Alexa 647 (cat. #9257) was from Cell Signaling Technology (Beverly, MA). Fluorophore-conjugated antibodies against cell-specific surface proteins: CD3 FITC, CD4 PE, CD8 PerCp-Cy5.5, CD14 FITC, CD16 PE, CD20 PerCP-Cy5.5 were purchased from BD Pharmingen. Anti-total and phosphorylated rabbit monoclonal antibodies to p38 MAPK (cat. #8690 and #4511), p44/42 MAPK (cat. #4695 and #4370), JNK (#4672 (rabbit polyclonal antibody) and #4668) and MSK1 (#3489 and #9595 (rabbit polyclonal antibody)) antibodies for Western blot analysis, as well as anti-Hsp90 (#4877) antibody were purchased from Cell Signaling Technology.
+ Open protocol
+ Expand
7

Multiparametric Flow Cytometry Analysis of Immune Cell Subsets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Surface and intracellular staining were performed as previously described [28 (link)]. Single immune cell populations from the spleen, lymph nodes or tumors were separated with a BD FACSAria II Cell Sorter. Flow cytometric analyses were performed with Flowjo (Tree Star). The following antibodies were used for cell staining: anti-CD3 (clone 145-2C11), anti-CD4 (clone RM4-5), anti-CD8 (clone 53-6.7), anti-CD49b (clone DX5), anti-CD11b(clone M1/70), anti-CD11c (clone HL3), anti-CD19 (clone 1D3), anti-CD25 (clone PC61), anti-CD69 (clone H1.2F3), anti-CD62L (MEL-14), anti-CD44 (clone IM7), anti-Foxp3 (clone FJK-16s), anti-Granzyme B (clone GB11), anti-CCR4 (clone 2G12), anti-CCR5 (clone HM-CCR5), anti-CXCR3 (clone CXCR3-173), NK1.1(clone PK136), anti-F4/80 (clone BM8), anti-Gr-1 (clone RB6-8C5), anti-interferon-γ (IFN-γ, clone XMG1.2), and anti-NK1.1 (clone PK136), CD4 blocking mAb (clone GK1.5), and CD8 blocking mAb (clone 53-6.7).
For detection of phosphorylated S6 proteins, cells from LNs cultured with PMA (10ng/ml) and Ionomycin (500ng/ml) at designated times were immediately fixed with phosflow Lyse/Fix buffer (BD Biosciences) and permeabilized by Phosflow Perm buffer (BD Biosciences). Cells were stained with the Alex488 conjugated antibody for S6P (Ser235,236) (D57.2. 2E; Cell Signaling Technology)
+ Open protocol
+ Expand
8

Platelet Activation Biomarkers by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
We used flow cytometry to measure surface P-selectin, activated GPIIb/IIIa and PNCs. Citrated blood was diluted 1:6 with Dulbecco phosphate-buffered saline (DPBS with Ca2+/Mg2+) containing 525 antithrombin units/mL of recombinant hirudin (Hyphen BioMed, Neuville-sur-Oise, France) and incubated (15 min, RT) with TRAP-6 (20 µM; Abcam, Cambridge, UK), ADP (20 µM; möLab, Langenfeld, Germany) or DPBS. Next, samples were incubated (15 min, RT) with two specific antibody mixes: (1) HIP1 clone mouse anti-human CD42b-PE + AK4 clone mouse anti-human CD62P-PE Cy7 + PAC-1 clone mouse anti-human CD41/CD61-AF647; (2) HI30 clone mouse anti-human CD45-Pacific Blue + HIP1 clone mouse anti-human CD42b-PE; or matched isotype control mixes (all from BioLegend, San Diego, CA, USA). Subsequently, samples were incubated (30 min, RT) with prewarmed (37 °C) phosflow lyse/fix buffer (BD Biosciences, San Jose, CA, USA), centrifuged (700× g, 5 min, RT), resuspended with DPBS and analyzed using a FACSCanto II flow cytometer (BD, Franklin Lakes, NJ, USA). The results are provided as the percentage of positive cells.
+ Open protocol
+ Expand
9

Measurement of Erk1/2 Phosphorylation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Harvested cells were fixed in Phosflow™ Lyse/Fix buffer (BD Biosciences) for 10 min at 37°C and permeabilized with buffer containing 90% cold methanol. For determination of Erk1/2 phosphorylation, permeabilized cells were incubated with anti-phosphorylated-Erk1/2 (Thr202/Tyr204) antibody (Cell Signaling Technology, Inc.) for 1 hour at room temperature. After washed with Pharmingen™ Stain buffer, cells were stained with goat anti-rabbit antibody conjugated AlexaFluor 488 for 1 hour at room temperature. Fluorescence-labeled cells were measured by FACSVerse flow cytometer (BD Biosciences) and analyzed using FlowJo software.
+ Open protocol
+ Expand
10

T cell cytotoxicity assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
T cells were co-cultured with target cells at a ratio of 1:1 for 45 minutes, then lysed and fixed using PhosFlow Lyse/Fix buffer (cat #558049, BD Biosciences), detailed in Supplementary Materials and Methods, and analyzed via flow cytometry.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!