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44 protocols using recombinant human il 2

1

Expansion of KIR3DL3+ T and NK Cells

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KIR3DL3+ CD8+ T cells were purified by FACS and then cultured with allogeneic PBMCs as feeder cells (irradiated at 3000 rads, feeder cells: T cells=10:1) in OpTimizer (Invitrogen) supplemented with 5% human AB serum (Sigma-Aldrich), 1% L-glutamine, 100 U/mL penicillin, 100 μg/mL streptomycin and anti-CD3/CD28 Dynabeads (Gibco), recombinant human IL-2 (100 ng/mL, Biolegend).
Human primary NK cell subpopulations or NK92 cell subpopulations (KIR3DL3+ or KIR3DL3 NK92 cells) were sorted by FACS based on KIR3LD3 and/or TMIGD2 expression. Primary NK cell subpopulations were then expanded by culturing with autologous PBMCs as feeder cells (irradiated at 3000 rads, feeder cells: NK cells=20:1) in OpTimizer (Invitrogen) supplemented with 5% human AB serum (Sigma-Aldrich), 1% L-glutamine, 100 U/mL penicillin, 100 μg/mL streptomycin and anti-CD3 OKT3 (10 ng/mL, Biolegend), recombinant human IL-2 (40 ng/mL, Biolegend) and IL-15 (10 ng/mL, Biolegend). Five days later, NK cells were further expanded in the same medium without anti-CD3 and feeder cells.
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2

Evaluating T Cell-Mediated Cytotoxicity Against Pancreatic Cancer

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Peripheral blood mononuclear cells (PBMCs) were separated from healthy human donor peripheral blood by ficoll through density-gradient centrifugation. T cells were further separated from PBMCs by Pan T Cell Isolation Kit (Miltenyi Biotec) according to the manufacture’s protocol. T cells were expanded and activated by incubating with RPMI1640 containing recombinant human IL-2 (BioLegend) (10 ng/mL) in anti-CD3 antibody (BioLegend) (10 μg/mL) and anti-CD28 antibody (10 μg/mL) (BioLegend) pre-coated tissue culture plate. PANC-1 and BxPC-3 were seeded in 24-well plates and stimulated with 10 μg/mL LPS or PBS as control. After 24 h, cancer cells were washed twice with PBS, and then T cells were added into wells at a ratio of 20:1. Anti-human PD-L1 or IgG isotype (20 μg/mL) (Bio X cell) as control were used to block the cancer cell endogenous PD-L1. After co-culturing for 7 days, cells were washed with PBS for three times, followed by 4% paraformaldehyde fixing for 20 min and stained by crystal violet solution. The ratio of colony number in each well to colony number in T cell+ IgG well was calculated as relative colony number.
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3

Expansion of Antigen-Specific CD8+ T Cells from MS Patients

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PBMCs (6 × 106 to 2.4 × 107) from untreated MS patients were stimulated with pools of 5 myelin peptides (final concentration 10 µg/mL each) with recombinant human IL-2 (10 ng/mL) in 96-well plates (5 × 105 cells/well) and incubated (37 °C, 5% CO2) for 1 wk. All T cell culture was done using RPMI 1640 with l-glutamine containing 10% heat-inactivated FBS (Life Technologies), 55 nM 2-mercaptoethanol (Life Technologies), penicillin/streptomycin/glutamine (Life Technologies), 1 mM sodium pyruvate (Life Technologies), MEM nonessential amino acids (Life Technologies), and MEM vitamin solution (Life Technologies). Peptides tested were those indicated in SI Appendix, Table S1. Wells from individual patient samples were pooled together, CD8 purified, treated with dasatinib, stained with pools of tetramers (containing the same cognate antigens from the primary stimulation), followed by surface staining as detailed above. Tetramer-positive CD8+ T cells were sorted on a FACSAria cell sorter into a 96-well round-bottom plate (50 to 100 cells per well). Sorted cells were stimulated for 2 wk with 2 µg/mL PHA-L (Sigma-Aldrich), 10 ng/mL recombinant human IL-2 (BioLegend), and irradiated (3,000 rad) allogenic feeder PBMCs. Cells were refed with half volume of fresh media and IL-2 every 3 to 4 d.
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4

Ectopic ESCs Co-culture Assay

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Ectopic ESCs were cultured in 24-well plates (Corning, Steuben County, NY, USA) at a density of 1 × 105 cells/well. The co-culture systems were established by incubating 2 × 105 monocytes with ESCs or alone, adding of estrogen (10−8 M; Sigma), 1-MT (0.05 mM; Sigma), or estrogen (10−8 M; Sigma) plus 1-MT (0.05 mM; Sigma). Meanwhile, naive CD4+ T cells were cultured in 24-well plates that coated with monoclonal anti-CD3 (5 μg/ml; Biolegend) and monoclonal anti-CD28 (1 μg/ml; Biolegend), in the presence of recombinant human IL-2 (50 ng/ml; Biolegend). The monocytes-derived macrophages and 2 × 105 naive CD4+ T cells were collected to co-culture with ESCs in 1 ml medium/well for 5 days (Supplementary Figure 1).
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5

Activated T-Cell Immunophenotyping by Flow Cytometry

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Jurkat cells were cultured in RPMI1640 medium supplemented with 10% FBS and activated with 10 ng/mL phorbol myristate acetate (PMA; Thermo Fisher Scientific) or with Dynabeads Human T-activator CD3/CD28 (Thermo Fisher Scientific). After activation, the cells were collected, stained with a cell viability dye (Ghost V450, TONOBO), and the following allophycocyanin (APC)-conjugated antibodies: anti-human CD69 (BioLegend, clone FN50), or with isotype control (BioLegend, clone MOPC-173 and clone MOPC-21; isotype 1 and isotype 2, respectively) and analyzed using flow cytometry.
Human peripheral blood mononuclear cells (PBMC) and healthy mouse splenocytes were cultured in RPMI1640 medium supplemented with 10% FBS at a density of 1 × 106 cells/mL. Cells were activated with 25 μL of CD3/CD28 beads per 1 × 106 cells (Gibco, Dynabeads human or mouse T-activator) and recombinant human IL2 (BioLegend). Subsequently, the cells were collected and stained with a cell viability dye (Ghost UV780, TONOBO), blocked with TruStain FcX (BioLegend, human or anti-mouse CD16/32, clone 93), and stained with CD3 (BioLegend, anti-human, clone HIT3a or anti-mouse, clone 17A2) and CD69 (BioLegend, anti-human, clone FN50 or anti-mouse, clone H1.2F3) for flow cytometric analysis.
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6

Regulatory T Cell Suppression Assay

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Peripheral blood mononuclear cells (PBMCs) were isolated by Lymphoprep (Stemcell Technologies Inc.) density gradient centrifugation. CD4+CD25+ T cells were obtained by positively selection using CD4+CD25+ T cells (Regulatory T cells) micro-magnetic beads according to the manufacturer instructions (Miltenyi Biotec). CD4+CD25 cells were obtained by negatively selection according to the manufacturer instructions (Miltenyi Biotec). CD4+CD25+ T cells were cultured in 96-well plates that coated with monoclonal anti-human CD3 (5 μg/ml; Biolegend, clone: OKT3) and monoclonal anti-human CD28 (1 μg/ml; Biolegend, clone: CD28.2), in the presence of recombinant human IL-2 (50 ng/ml; Biolegend), while CD4+CD25 cells were cultured in 24-well plates that coated with monoclonal anti-CD3 (5 μg/ml; Biolegend) and monoclonal anti-CD28 (1 μg/ml; Biolegend). Treg cells were collected to culture with non-treated ESCs, 1-MT-pretreated ESCs, vector-pretreated ESCs, and MRC2-silenced ESCs or not for 48 h after Treg cells proliferation for two weeks. After that, Treg cells from these groups respectively cultured with paired CFSE-labeled CD4+CD25 T cells (Teff) for 48 h and then detected by flow cytometry.
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7

Generating antigen-specific CD8+ T cells

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BMDC were generated as described (22 (link)). CD8+ T cells were isolated from spleen and lymph nodes of indicated mice through MACS-beads (Miltenyi Biotech). BMDC and T cell co-culture was performed as previously described (6 (link)). Briefly, we mixed DC with CD8+ T cells at the ratio of 1 DC : 10 T cells in round-bottom 96 wells (5 × 104 T cells/well) in the presence of 0.1 µg/ml α-CD3. The conditions of the culture are indicated in the text. For RNA isolation and RT-PCR, T cells were harvested at day 3 of culture. For IFN-γ and IL-10 staining, T cells were harvested at day 4 of the culture and restimulated with PMA (100 ng/ml, Sigma) or inomycin (1 µg/ml, Sigma) in the presence of Golgi-Stop (1 µl/ml, BD Biosciences) for 4 hours. Intracellular cytokine staining (ICS) was performed as we previously reported (6 (link)). To measure T cell cytokine production by ELISA, day 4 cultured T cells were restimulated with plate bound α-CD3 (1 µg/ml) for overnight. Supernatants were then measured by ELISA as previously described (6 (link)). The concentrations of the cytokines used in the culture are as following: recombinant human IL-2 (300 U/ml); mouse IL-27 (Biolegend), 10 ng/ml and IFN-αA (R&D) 250 U/ml respectively.
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8

Quantification of Dsg-specific Memory B Cells

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Dsg-specific memory B cells were measured using a polyclonal stimulation assay, essentially as previously described (Pinna et al., 2009 (link)). Briefly, PBMCs were cultured at 1×106 cells/mL in RPMI supplemented with penicillin/streptomycin, L-glutamine, 10% FBS, a 50 μM of beta-mercapto-ethanol (Sigma) (R10) containing R848 (1 μg/mL, Invivogen) and recombinant human-IL2 (10 ng/mL, Biolegend) for 3 days at 37°C. Total and Dsg3-specific IgG-secreting cells were quantified by ELISPOT assay, in which a 96-well ELISPOT filter plates (Millipore) were coated overnight with rDsg3 antigen (3 μg/mL, provided by the Hertl Lab), rDsg1 antigen (3 μg/mL, EuroImmun), or polyvalent goat anti-human Ig (25 μg/mL, Rockland) in PBS/1 mM CaCl2. Plates were washed and blocked by incubation with R10 at 37°C for 2 h. PBMCs were added to the plates in a dilution series and incubated for 5 hs at 37°C. Plates were washed with PBS, followed by PBS/0.05% Tween, and incubated with biotinylated anti-human IgG antibody (Invitrogen) at room temperature for 90 min. After washing, plates were incubated with an avidin-D horseradish peroxidase conjugate (Vector laboratories) and developed using 3-amino-9-ethyl-carbazole substrate (Sigma). Plates were scanned and analyzed using an automated ELISPOT counter (CTL, Cellular Technologies).
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9

Peripheral Immune Cell Isolation and Stimulation

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Isolation, stimulation, and purification of peripheral immune cells was performed as previously published in Kannarkat et al.45 (link). Briefly, PBMCs were isolated from whole blood using density centrifugation with Ficoll-Paque (GE Healthcare, Uppsala, Sweden). Monocytes and T cells were isolated from PBMCs using positive selection columns with anti-CD14 and anti-CD3 paramagnetic beads, respectively (Miltenyi Biotec, Bergisch Gladbach, Germany). The isolated cell fraction was processed for flow cytometry as follows. Monocytes and T cells were plated for stimulation in a 12-well plate at a density of 1×106 cells per well. Monocytes were plated for 18 or 72 h with or without 5ng/mL IFN-γ (PeproTech, Rocky Hill, NJ, USA). T cells were stimulated for 18 or 72 h with or without anti-CD3/CD28 beads (1:1 cells:beads) (Dynabeads® Life Technologies, Grand Island, NY, USA) and 30 U/mL recombinant human IL-2 (Biolegend, San Diego, CA, USA).
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10

PBMC Activation and Apoptosis Assay

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Human peripheral blood samples were obtained from five different healthy volunteers (BWH Specimen Bank). Peripheral blood mononuclear cells (PBMCs) were isolated by density gradient centrifugation using Lymphoprep (StemCell Technologies). PBMCs were cultured at 1.5 × 106 cells per mL in RPMI 1640 media (Lonza), supplemented with 10% human serum (GemCell) (10% HS-RPMI), recombinant human IL-2 10 ng per mL (or 100 U per ml, BioLegend) and R848 1 µg per mL (Cayman Chemicals) for 5 days, at 37 °C, 5% CO2. PKS21221 in DMSO, or DMSO only for control, was added to the culture media on day 5, and cells were incubated for additional 12, 24, and 48 h. Cells were then stained with surface marker antibodies and analyzed by flow cytometry. The viability and apoptosis were assessed using Annexin V Apoptosis Detection Kit (BD Biosciences).
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