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7 protocols using pe anti mouse cd31

1

Isolation and Characterization of Mouse Adipose-Derived Stem Cells

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Mouse adipose-derived stem cells (ASCs) were isolated from inguinal subcutaneous fat of C57BL/6 mice that were fed normal chow. The cells were cultured as described previously [12 (link)]. Briefly, subcutaneous adipose tissues were digested with collagenase type 1 (Sigma-Aldrich, St. Louis, MO, USA) in PBS (phosphate-buffered saline) by incubation in a shaker at 37 °C for 30 min. The digestion was terminated by the addition of 10% fetal bovine serum (FBS), and centrifuged at 1200 rpm for 5 min. Cells were suspended in complete medium made of DMEM/F12 (Dulbecco modified Eagle medium) medium supplemented with 10% FBS and 1% penicillin and streptomycin. Cells were cultured in 37 °C at 5% CO2 incubator. ASCs at passage 3–5 were used in all the experiments.
ASCs were identified by FACS as described previously [12 (link)] with fluorescence-conjugated anti-mouse antibodies, FITC Hamster Anti-Rat CD29 (BD Pharmingen; Cat.555005), Alexa Fluor 647 Rat anti-Mouse CD34 Clone RAM34 (RUO) (BD Pharmingen; Cat.560233), APC Rat Anti-Mouse CD90.2 Clone 53-2.1 (RUO) (BD Pharmingen; Cat.561974), APC anti-mouse CD105 (Biolegend; Cat.120413), PE anti-mouse CD31 (Biolegend; Cat.102407), or PE/Cy7 anti-mouse CD45 (Biolegend; Cat.103113), according to the manufacturer’s instructions. Flow cytometry was conducted on a Becton-Dickinson LSR I analyzer.
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2

Isolation of Endothelial Cell Populations

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INF and uninflamed ears from individual animals were cut into small pieces and enzymatically digested in a 4-ml mixture of 10 mg/ml collagenase IV (Thermo Fisher Scientific), 5 mg/ml dispase II (Sigma-Aldrich), 0.1 mg/ml DNase I (Roche), and 1 mM CaCl2 (Sigma-Aldrich) in PBS (Thermo Fisher Scientific) at 37°C for 15 min in rotation. Suspensions were passaged through a 40-µm cell strainer (BD Biosciences), and resulting single-cell suspensions were stained at 4°C with APC/Cy7 anti-mouse CD45 (BioLegend), PE anti-mouse CD31 (BioLegend), APC anti-mouse Podoplanin (BioLegend), AF488 anti-mouse LYVE-1 (eBioscience), and 7-AAD (BioLegend). After excluding doublets and dead cells, the different EC populations (∼30,000 BECs, ∼5,000 colLECs, and ∼2,500 capLECs per mouse/condition) were isolated on a FACSAria Cell Sorter (70-µm nozzle) using BD FACSDiva software (both BD Biosciences) and sorted into PicoPure RNA extraction buffer (Thermo Fisher Scientific). RNA was isolated and genomic DNA was eliminated using the PicoPure RNA isolation kit (Thermo Fisher Scientific). RNA quality and concentration were analyzed with a Bioanalyzer (Agilent Technologies), and samples of the same animal with RNA integrity number >7 and minimum concentration of 200 ng/ml were further processed for RNA sequencing.
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3

Isolation and Purification of Cardiac Endothelial Cells

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Left ventricular tissue was minced and digested in digestion solution containing dispase II (Wako: 383–02281) (50 μg/mL) and collagenase type 1 (Wako: 035–17604) (1 mg/mL). Digests were further dissociated with 18 G needle. Remaining debris was removed and the supernatant was filtered through 40-μm cell strainer. Cells were suspended in PBS containing 4% FBS and incubated with rat monoclonal antibody against CD31 (PECAM1) (BD Biosciences: 553370). After washing with PBS with 0.5% BSA and 2 mM EDTA, cells were incubated with anti-rat IgG microbeads (Miltenyi Biotec: 130–048), and separated with separation columns (Miltenyi Biotec: 130-042-201). For flow cytometric analysis, cells were stained with LIVE/DEAD Fixable Aqua Dead Cell Stain Kit (Invitrogen: L34957), Tru Stain fcX (BioLegend 101320), and PE anti-mouse CD31 (BioLegend: 102408). After washing, cells were analyzed using Attune® NxT acoustic focusing cytometer (Life Technologies). The data were analyzed by Flo Jo software (Tree Star). Isolation of adult cardiomyocytes using langendorff perfusion apparatus was performed as previously reported39 (link).
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4

Isolation and Sorting of Brain Endothelial Cells

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To sort dura mater or brain ECs, CD45+ hematopoietic or CD45 non-hematopoietic cells by FACS, tissues were isolated as described above and dissociated in collagenase type I (1 mg/ml, Worthington), dispase (1 mg/ml, Gibco), and DNase I (0.1 mg/ml, Merck) dissolved in DMEM/F12 supplemented with 5% fetal bovine serum (FBS) at 37 °C for 30 min. Cell suspensions went on RBC lysis by suspension in ACK lysis buffer (Gibco) for 5 min on ice and blocked with mouse anti-CD16/CD32 (553141, BD Bioscience) before being incubated for 20 min with indicated antibodies in FACS buffer (2% FBS in PBS). After several washes, brain ECs were enriched using automatic magnetic-associated cell sorting (MACS, Miltenyi-Biotec) prior to be being stained with fluorochrome-conjugated primary antibodies. Cell sorting was performed with FACS Aria II (Beckton Dickinson). Dead cells were excluded using DAPI (Sigma-Aldrich) staining and cell doublets were systematically excluded. The following antibodies were used for MACS: biotin anti-mouse CD31 (rat monoclonal, 130-119-562, Miltenyi-Biotec); anti-biotin microbeads (130-090-485). The following antibodies were used for FACS: PE anti-mouse CD31 (rat monoclonal, 102508, Biolegend); APC anti-mouse CD45 (rat monoclonal, 103112, Biolegend); FITC anti-mouse TER-119 (rat monoclonal, 116206, Biolegend).
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5

Murine Brain Immunofluorescence Staining

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Brains were sectioned at 10 µm on a cryostat (Leica), mounted on SuperFrost Plus slides (Thermo Fisher) and fixed with 4% paraformaldehyde for 10 min. Slides were washed with PBS, and non‐specific binding blocked (1% BSA, 0·05% Tween‐20 in PBS) for 1 h, followed by overnight incubation at 4 °C with Alexa Fluor® 647 anti‐mouse CD45·1 (1:100, BioLegend) and PE anti‐mouse CD31 (1:100, BioLegend). Slides were then washed with PBS, incubated with DAPI (0·5 µg/ml) for 30 min, washed again with PBS and covered‐slipped with ProLong Gold (Invitrogen). Images were captured using an Olympus BX63 upright microscope through CellSens Dimension v1·16 (Olympus).
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6

Isolation and Identification of Mouse MSCs

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Bone marrow was extracted from mouse femur and tibia. Using a 70 μm cell strainer (pluriSelect), suspensions were filtered to remove debris and then layered on lympholyte-M medium (Cedarlane Laboratories Ltd) for purification. Cells were then stained 20 min with an appropriate monoclonal antibody. Antibodies used were anti-mouse CD31-PE (102508, BioLegend), anti-mouse CD45-FITC(11-0451-82, Thermo Fisher Scientific), and anti-mouse PDGFRa-APC (17-1401-81, Thermo Fisher Scientific). Flow cytometry was performed with FACSVerse (BD Biosciences), and the data were analyzed using Flowjo software (BD Biosciences). Gates for MSCs were defined as positivity for PDGFR-α and negativity for CD31, CD45, according to the fluorescence intensity of the isotype control.
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7

Multiparametric Immunofluorescence and Flow Cytometry

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The following Abs were used for IF microscopy (IFM): anti-mouse IgA Ab-PE (97013; Abcam), anti-mouse IgG Ab-FITC (1030-02; Southern Biotech), rabbit monoclonal anti-Wilms tumor protein Ab (ab89901; Abcam), and anti-rabbit IgG-Alexa Fluor 488 (ab150073; Abcam). For FCM, the following Abs were used: anti-mouse IgA-APC (clone 11-44-2; Southern Biotech), anti-mouse CD73-biotin (clone TY/11.8; BioLegend), anti-mouse CD45-PerCP-Cy5.5 (clone 30-F11; BioLegend), anti-mouse CD31-PE (clone 390; BioLegend), anti-mouse TER119-BV510 (clone TER-119; BioLegend), rabbit polyclonal anti-HP1γ (CBX3) Ab (2619; Cell Signaling Technology), rabbit monoclonal anti-HP1β (CBX1) Ab (8676; Cell Signaling Technology), rabbit IgG (for isotype-matched control; 011-000-003; Jackson ImmunoResearch), anti-rabbit IgG-BV421 (clone Poly4064; BioLegend), and anti-human IgG Fcγ-Alexa Fluor 647 (709-606-098; Jackson ImmunoResearch). Biotinylated Abs were detected using streptavidin-APC-Cy7 (405208; BioLegend).
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