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6 protocols using micrornas quantitation pcr kit

1

RNA Extraction and Expression Analysis

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Total RNA was extracted from GBC tissue samples and cell lines using TRIzol (TaKaRa, China) according to the manufacturer's protocol. For mRNA and lncRNA analyses, the reverse transcription and qPCR reactions were performed as previously described [18 (link)]. ACTIN was used as an internal control. For miRNA analyses, RNA was reversed transcribed into cDNAs using the microRNA First Strand cDNA Synthesis kit (Sangon Biotech, China). The cDNA template was amplified by real-time RT-PCR using the microRNAs Quantitation PCR kit (Sangon Biotech, China). Expression of miRNA was normalized with respect to small nuclear RNA U6. The real-time PCRs were performed in triplicate. The relative mRNA expression change was calculated by using 2−△△Ct method. The PCR primers used were as follows: 5′-AAAGACCTGTACGCCAACAC-3′ (forward) and 5′-GTCATACTCCTGCTTGCTGAT-3′ (reverse) for ACTIN, 5′-TGGGAATGGAGGGAAATAAA-3′ (forward) and 5′-CCAGGAACTGTGCTGTGAAG-3′ (reverse) for LINC00152, and 5′-TGCAACATGGAAGGTATTGC-3′ (forward) and 5′-TTCACAAATCAGCACCAAGC-3′ (reverse) for HIF-1α.
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2

Quantitative Analysis of miR-153 Expression

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Total RNA was extracted from tissues and cells by TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.). cDNA was synthesized using the PrimeScript RT reagent kit (Promega Corporation). For the detection of miR-153, qPCR was conducted using the MicroRNAs Quantitation PCR kit [Sangon Biotech (Shanghai) Co., Ltd.]. U6 was used as an internal control for the detection of miR-153 expression. The sequences of the primers used for miR-153 and U6, as well as those for insulin-like growth factor 1 receptor (IGF1R) and GAPDH are listed in Table I. The thermocycling conditions were as follows: 50°C for 2 min and 95°C for 10 min, followed by 40 cycles of 95°C for 15 sec and 60°C for 10 min. Fold changes in the expression of each gene were calculated using the 2−∆∆Cq method (16 (link)).
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3

Quantification of GRIN2D mRNA and miR-129-1-3p

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Total RNA was extracted using TransZol (Beijing TransGen Biotech). Each RNA sample was reverse transcribed into cDNA using the TransStart Top Green qPCR SuperMix kit (Beijing TransGen Biotech). The levels of GRIN2D mRNA and GAPDH mRNA were determined by qRT‐PCR. Total miRNA was isolated using the SanPrep Column MicroRNA Mini‐Preps Kit (Sangon Biological Engineering Technology & Services Co., Ltd). Each miRNA sample was reverse transcribed into cDNA using the MicroRNA First Strand cDNA Synthesis Kit (Sangon). The levels of miRNA‐129‐1‐3p and U6 snRNA were determined by qRT‐PCR using the MicroRNAs Quantitation PCR Kit (Sangon). The PCR primer sequences are shown in Tables 2 and 3. Relative expression levels of GRIN2D and miRNA‐129‐1‐3p were calculated using the 2−ΔΔCt method and normalized to GAPDH and U6, respectively.
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4

Gene Expression Quantification Protocol

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Total RNA was prepared using Trizol reagent (Invitrogen). Then total RNA (1 μg) was reverse transcribed using the PrimeScript™ RT Reagent Kit (Takara Bio, Shiga, Japan) following the manufacturer's instructions. The qRT-PCR was performed using SYBR® Premix Ex Taq™ (Takara) or MicroRNAs Quantitation PCR Kit (Sangon Biotech, Shanghai, China). PCR was run on Realtime PCR system (Applied Biosystems, Carlsbad, CA) under the following condition: initial denaturation at 95 °C for 5 min, 95 °C for 20 s, annealing at 56 °C for 30 s, extension at 72 °C for 1 min, 35 cycles, and final extension at 72 °C for 5 min. Fold changes in expression of each gene were calculated using the 2−ΔΔCt method. And the Ct values for the mRNA and miR-873-5p were normalized to β-actin and U6, respectively.
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5

Quantifying miR-let-7b in CD133+ OCSCs

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To assess miR-let-7b expression in CD133+ OCSCs, qRT-PCR analysis was performed with internal standards. Total RNA was isolated from the harvested cells and reverse transcribed into cDNA with the RevertAid Reverse Transcriptase (Thermo Fisher Scientific) according to the manufacturer’s instructions. qRT-PCR was performed using the MicroRNAs Quantitation PCR Kit (Sangon Biotech). The relative expression of miR-let-7b relative to non-treated cells was calculated by the ΔΔCt method in triplicate experiment.
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6

Quantification of miRNA and mRNA Expression

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Total RNA was extracted using TRIzol (Sangon Biotech, B511311, Shanghai, China) and stored at −80°C. A NanoDrop 2000 UV‐Vis spectrophotometer (Thermo Scientific, USA) was used to determine the concentration and quality of total RNA. Then, an M‐MuLV First‐Strand cDNA Synthesis kit (Sangon Biotech, B532435, Shanghai, China) was used for reverse transcription of total RNA. An Applied Biosystems 7500 Sequence Detection System was used to determine the mRNA levels with 2×SG Fast qPCR Master Mix (Low Rox) kit (Sangon Biotech, B639272, Shanghai, China). Each sample was analysed in triplicate. The β‐actin gene served as a control, and the data were analysed using the 2−(ΔΔCt) method. To detect mature miR‐21‐5p or pri‐miR‐21, a microRNA First‐Strand cDNA Synthesis kit (Sangon Biotech, B532453, Shanghai, China) was used to synthesize cDNA following the manufacturer's protocol. A MicroRNAs Quantitation PCR Kit (Sangon Biotech, B532461, Shanghai, China) was used to conduct qRT‐PCR, and an Applied Biosystems 7500 Sequence Detection System was used to detect the levels of miR‐21‐5p and pri‐miR‐21. Each sample was analysed in triplicate. U6 small nuclear RNA served as a control, and the data were analysed using the 2−(ΔΔCt) method. The sequences of all primers are listed in Table 1.
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