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Restriction and modifying enzymes

Manufactured by New England Biolabs
Sourced in Canada, United Kingdom

Restriction and modifying enzymes are essential tools used in molecular biology and genetic engineering. These enzymes play a crucial role in the manipulation and analysis of DNA. Restriction enzymes recognize and cleave specific DNA sequences, allowing for the precise fragmentation of genetic material. Modifying enzymes, such as ligases and polymerases, facilitate the joining, synthesis, and modification of DNA molecules. These enzymes are fundamental for a wide range of applications, including gene cloning, genome editing, and DNA sequencing.

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4 protocols using restriction and modifying enzymes

1

Fluorescent Assay for SGLT2 Expression

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Fluorescein isothiocyanate-labeled inulin and canagliflozin (Invokana) were purchased from Sigma-Aldrich (Oakville, ON, Canada) and Janssen Inc. (Toronto, ON, Canada), respectively. Dulbecco Modified Eagle Medium (DMEM) (Cat. No. 11966-025), Ham’s F12 medium (Cat. No. 11765-054) and fetal bovine serum (FBS) were bought from Gibco (Thermo Fisher Scientific, Montreal, QC, Canada). Oligonucleotides were synthesized by Integrated DNA Technologies, Inc. (Coralville, IA) and listed in Supplemental Table 1. Restriction and modifying enzymes were purchased from New England Biolabs (Whitby, ON, Canada). The sources of antibodies used are listed in Supplemental Table 2. HK-2 (an immortalized human renal proximal tubular cell line) (Cat. No. CRL-2190) was obtained from American Tissue Cell Collection (ATCC) (Manassas, VA) (http://www.atcc.org). Human SGLT2 gene promoter (N-1,986/+22) was amplified from HK-2 genomic DNA by PCR with specific primers (Supplemental Table 1) and then inserted into pGL4.20 reporter vector (Promega, Sunnyvale, CA) at Xho1and Bgl II restriction sites.
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2

Steroid Ligand Preparation and Storage

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17β-Oestradiol (E2/oestrogen) and analytical grade reagents were obtained from Sigma-Aldrich (Dorset, U.K.); Δ4-dafachronic and (25S)-Δ7-dafachronic acids (DAs) were purchased from Cambridge Bioscience (Cambridge, U.K.) and Insight Biotechnology Ltd (Wembley, London, U.K.) respectively. Stock solutions of these ligands were prepared in sterile DMSO (Sigma-Aldrich) at 1000× concentrations (100 µM E2 or 1 mM DAs) and stored in aliquots at −20°C. Restriction and modifying enzymes were purchased from New England BioLabs (Hitchin, U.K.).
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3

Yeast Growth and Genetic Manipulation

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Unless specified, chemicals were from Sigma-Aldrich (St. Louis, MO), restriction and modifying enzymes were from New England Biolabs (Ipswich, MA), DNA oligonucleotides were from Integrated DNA Technologies (Skokie, IL), yeast media components were from Sunrise Science Products (San Diego, CA). Media were prepared as described (Burke et al., 2000 ). Unless indicated otherwise, yeast cultures were grown at 30°C in synthetic complete glucose (SDC) medium. For chromatin localization experiments, cells were grown at room temperature in YPD overnight and then shifted to SDC for ≥ 1h before imaging. Experiments with HIS4 or ILV2 were grown in SDC-His or SDC-Leu, respectively, to induce gene expression. Anchor Away experiments were cultured overnight in YPD or SDC then treated with 1μg/ml rapamycin for times indicated prior to confocal microscopy. Selection against URA3-SUP4-o was performed on SDC + 0.1% 5-fluoroorotate (FOA) plates (Randise-Hinchliff et al., 2016 (link)).
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4

Routine Molecular Biology Techniques

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Routine molecular biology techniques were performed according to standard procedures. Restriction and modifying enzymes (New England Biolabs) were used as recommended by the manufacturer. Plasmid DNA was prepared from E. coli and L. bulgaricus cells by use of BIOMIGA Plasmid Miniprep kits (PD1211-01). Chromosomal DNA was isolated from L. bulgaricus cells by use of BIOMIGA Bacteriall gDNA kits (GD2411-01).
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