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U 5100 spectrophotometer

Manufactured by Hitachi
Sourced in Japan

The U-5100 spectrophotometer is a laboratory instrument manufactured by Hitachi. It is designed to measure the absorbance or transmittance of light through a sample across a range of wavelengths. The core function of the U-5100 is to provide precise and accurate spectral analysis of various materials and solutions.

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20 protocols using u 5100 spectrophotometer

1

Evaluating PLL Coating's Effect on LP Growth

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The growth pattern of PLL-LP was determined, in order to evaluate the effect of the PLL coating on the growth of the cells. Both non-coated LP and PLL-LP were cultured anaerobically in MRS broth by shaking at 220 rpm in a shaking incubator at 37 °C. The turbidity of the bacterial solution, which indicates the increase in the growth of bacteria, was determined by measuring the optical density (OD) at a wavelength of 600 nm [23 ]. The turbidity of the MRS growth media broth was measured at predetermined time points until the stationary phase was reached. The degree of turbidity at the wavelength of 600 nm was measured by UV-Vis spectrophotometry (HITACHI U-5100 spectrophotometer, Tokyo, Japan). All results were obtained in independent triplicates.
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2

Bacterial Culture and Genetic Manipulation

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LB medium (L–1: 10 g tryptone, 5 g yeast extract, 5 g NaCl) or 2xTY medium (per liter: 16 g tryptone, 10 g yeast extract, and 5 g NaCl) was used. For β-galactosidase assays, cells were grown in M9 minimal salt medium (Miller, 1972 ); L–1: 3 g KH2PO4, 12.8 g Na2HPO4 × 7 H2O, 1 g NH4Cl, 0,5 g NaCl, 3 g casaminoacids; 0.1 mg/mL thiamin; 0.2% glucose; 1 mM MgSO4. If appropriate, antibiotics such as 40 μg mL–1 kanamycin, 20 μg mL–1 chloramphenicol, or 50 μg mL–1 ampicillin were added. Unless otherwise indicated, cultures were grown aerated in a shaker-incubator at 180 r/min and 37°C. Cell densities (OD600) were measured in a Hitachi U5100 spectrophotometer. E. coli strains and plasmids are listed in Supplementary Table S1; oligonucleotides obtained from eurofins Genomics (Ebersberg, Germany) used in this study are listed in Supplementary Table S2.
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3

Measuring Chlorophyll Levels in Tea Leaves

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Samples were collected from the first and second leaves of ten plants for each treatment. Leaves were weighed 0.2 g (fresh weight, FW). The tea leaves were ground with 10 mL of 80% acetone, the homogenate was filtered, and then the samples were centrifuged at 4000×g for 10 min to collect the supernatant. The optical density was measured with a U-5100 spectrophotometer (Hitachi, Japan) at 663 nm (OD663) and at 645 nm (OD645) for chlorophyll a (Chl a) and chlorophyll b (Chl b), respectively, using the following formulae: Chla concentrations = 12.72 × A663 − 2.59 × A645, Chlb concentrations = 22.88 × A649 − 4.67×A663.

where V and FW indicate the volume of the reaction system and the weight of the isolated tea leaves, respectively [41 (link)].
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4

Mangosteen Ultrasonic Extraction Optimization

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The plant material consisted of the fresh and frozen fruit flesh (pulp) and peel (pericarp) of G. mangostana. The fruit from Thailand were purchased at a local supermarket (Poland) in February 2019. Part of the material consisting of the mangosteen pulp and peel were subjected to a freezing process at a temperature of -20°C and thawing at +20°C, just before the extraction process. The fresh and frozen material were extracted using an ultrasonic bath with a thermostat at a frequency of 40 kHz and 250W of power for 15, 30 and 60 minutes, and 20%, 40%, 70% and 96% (v/v) ethanol as a solvent. The ultrasonic bath was set at 40°C. To prepare the extract, solvent was added to 0.5 g of plant material (pulp or peel) up to 10 cm 3 . The obtained 5% (w/v) extracts were stored at +4°C until analysis. The spectrophotometric measurements were performed in 1cm cuvettes, using a Hitachi U-5100 spectrophotometer.
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5

Bilosomal Encapsulation Efficiency Quantification

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In order to evaluate the encapsulation efficiency of therapeutic compounds in the optimized bilosomal formulation, UV-Vis spectroscopy was applied. Measurements were performed using a Hitachi U-5100 spectrophotometer (Hitachi, Mannheim, Germany) with a 1 cm path length quartz cell. The active cargo content was quantified at λCUR = 426 nm and λMB = 666 nm after the disruption of bilosomes with THF:water (1:1). The substance concentration was calculated using the calibration plot. The percentage of encapsulation efficiency was quantified using the Equation (1): given below.
Percentage encapsulation efficiency (EE%)= drug content in bilosomestotal drug added× 100% 
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6

Antioxidant Activity Evaluation of Infusions

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The antioxidant activity of infusions was evaluated by several in vitro methods. The ability to scavenge free radicals (RSA [%]) was assessed by the DPPH and ABTS methods. Moreover, the ability of samples to reduce ferric and cupric ions was evaluated using FRAP (ferric reducing antioxidant power), PFRAP (potassium ferricyanide reducing power), and CUPRAC (cupric ion reducing antioxidant capacity) methods. The evaluation of antioxidant activity by DPPH, ABTS, and FRAP methods was performed as described by Muzykiewicz et al. [47 (link)]. To evaluate ferric reducing capacity of infusions, the FRAP method, as described by Apak et al. [48 (link)], and the PFRAP technique (with slight modifications), according to Jayaprakasha et al. [49 (link)], were used. The incubation time was reduced to 10 min and absorbance was measured at 734 nm. The spectrophotometric measurements were performed in 1 cm cuvettes using Hitachi U-5100 spectrophotometer (Japan). In DPPH and ABTS methods the activity was expressed as RSA [%], whereas in CUPRAC technique as Trolox equivalents (TEAC)—mg Trolox/g RM (raw material). The reducing power evaluated using FRAP and PFRAP method was presented as FeSO4 equivalents—mg FeSO4/g RM. Three samples were prepared from each extract and the results are presented as an arithmetic mean ± standard deviation (SD).
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7

Spectrophotometric Analysis Setup

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Hitachi U 5100 spectrophotometer (Japan, Tokyo) connected with computer for controlling of measurement and data analyzing, temperature stabilizer, and glass cuvette with 1 cm optical path was used.
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8

Purification of Secreted DCcathB Protein

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The yeast medium containing the secreted DCcathB protein was purified through an affinity chromatography in a Ni-NTA superflow nickel column (Qiagen). The column was previously equilibrated with buffer containing 10 mM Tris-HCl, 100 mM NaCl and 50 mM NaH2PO4, pH 8.0. All purification steps were performed at 4°C. The protein was eluted with the same buffer with increasing imidazole concentrations (10, 25, 50, 75, 100 and 250 mM). The purified protein was analyzed in 12% SDS-PAGE. Fractions containing the purified protein were dialyzed using membranes of 3500 MW (Pierce) for 2 hours at 4°C in buffer containing 10 mM Tris-HCl, 100 mM NaCl and 50 mM NaH2PO4, pH 8.0. The protein was then concentrated in the SPD1010 SpeedVac® System (ThermoSavant) for 3 hours and in Vivaspin™ 3000 MWCO (GE Healthcare) for 1.5 h. The protein concentration was determined using Bradford’s method [47 (link)] in Hitachi U-5100 spectrophotometer.
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9

Quantifying Tissue Glycogen Levels

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Glycogen contents in the liver and soleus muscle were measured using the Phenol-sulfuric acid method. First, 50 or 100 mg of liver or soleus muscle, respectively, were homogenized in 0.8 mL of 10% trichloroacetic acid (Wako Pure Chemical Industries Ltd.), followed by centrifugation at 1,900 × g for 10 min for deproteinization. The supernatant (0.4 mL) was mixed with 0.8% ethanol (Wako Pure Chemical Industries Ltd.), followed by centrifugation at 1,900 × g for 10 min to precipitate glycogen. Then, the supernatant was decanted and the precipitated glycogen was r-suspended in 0.5 mL distilled water. Phenol (0.5 mL of 5% stock; Wako Pure Chemical Industries Ltd.) and 2.5 mL concentrated sulfuric acid (Kanto Chemical Co., Inc., Tokyo, Japan) were added to the resuspended glycogen solution, and the mixture was incubated for 20 min at room temperature (20–22 °C). Then, the absorbance was measured at 490 nm using a U-5100 spectrophotometer (Hitachi High-Tech Science Co., Tokyo, Japan). A standard curve was generated using a 40 mg/dL glucose (Wako Pure Chemical Industries Ltd.) solution.
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10

Erythrocyte Membrane Protein Analysis

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Washed erythrocytes were haemolysed by mixing with 1 mM phenylmethylsulfonyl fluoride and 5P1E buffer (5 mM phosphate buffer, 1 mM EDTA) on ice and centrifuged at 20,400 g, 4°C, for 15 min. The pellets were washed three times with 5P1E buffer to remove the haemoglobin and obtain the erythrocyte membrane fraction. After ensuring equal protein concentrations by measuring the absorbance using the Bradford reagent (Thermo Fisher Scientific, Waltham, MA, USA) and the U‐5100 spectrophotometer (HITACHI, Tokyo, Japan), the erythrocyte membranes were mixed with the sample buffer, electrophoresed on 8% SDS‐polyacrylamide gel and transferred to a PVDF membrane. The PVDF membrane was blocked with 5% skim milk in TBS and incubated with the following primary monoclonal antibodies separately in T‐TBS (TBS and 0.1% Tween 20): rat anti‐ATP11C antibody (11C4; 1:100012), mouse anti‐PLSCR1 antibody (1:5000; Abnova, Taipei, Taiwan) and mouse anti‐actin (1:50 000; Sigma‐Aldrich Inc). Thereafter, the membrane was washed three times and incubated with the following secondary antibodies in T‐TBS: rat IRDye 680RD for ATP11C and mouse IRDye 800 CW for PLSCR1 and actin. Fluorescence was detected and quantitated using a fluorescent scanner (Odyssey; LI‐COR). The levels of ATP11C and PLSCR1 were evaluated relative to the intensity of actin.
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